Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00273 ATGGTTTTGCGGAGGTTGTTCTTGTTCGCCAACGTCCTCCACATCGCTAGTGGTTTGGGTTGTCGGGTTTCAACAACCAAGGTGAGATCTATCATTCTTTCCATCCTCCACCTCTACTCCAACACGATCAACCCTCCTTTGACTTTCTTGGATTCGTCGTCTGCAAGGGTTGTAGTGGGTGTCGATGTTGGTTTCTTTTTGGACGGTTGCTGCATATCTGGTTTCCCTGCAGGGCAAGGCGAGATAATGGAAGGACGTTCTGTGGAATATTGTGATACTAAAAAGGCCAGAGAATTTGTCAATGACGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATTATGACTTTCTGAAAGTCTTGGTGGATTACAAGAAACAAAGGATCGATGCTGCAAATCTCGGTAGATTTTTGAAGGGATTATTTGAAGGTCATAGAGATCTTATACCAACATTGAACTACTTCATGCCTGATGGATTTGAAATCAAGCTCCCATCGGAGGAGGAACAATCTCTCGAACATTTTGATGCCAAAAATGCGAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATGGTAACTTTTTGAATGTCTTGAAAGATTACAAGACACAAAGAATTGATGCTGCAAATCTTGTTAACATAATGAAGGAAATATTTGAAGGGCATGGAGATTTAATTTTAAGATTAAACTACTTCCTGCCTGATGGATATGAAATCAAGCTTCCCTTGGAGGAGGAAAAATCTCTGGAACATTTTGTAGCCAAAAATGCGAAAGAATTTAGCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATGAAAACTTTCTGAATGTCTTGAAGGATTACATGACACAAAGAATTGATGCTGCAAATCTTGTTAACATAATGAAGGAAATATTTGAAGGGCATGGAGATTTAATTTTAAGATTAAACTACTTCCTGCCTGATGGATATGAAATCAAGCTTCCATTGAAGGAGGAACAATCTCACGTTTAA 1044 0.3764 MVLRRLFLFANVLHIASGLGCRVSTTKVRSIILSILHLYSNTINPPLTFLDSSSARVVVGVDVGFFLDGCCISGFPAGQGEIMEGRSVEYCDTKKAREFVNDVKCRFIQVNQRDKYYDFLKVLVDYKKQRIDAANLGRFLKGLFEGHRDLIPTLNYFMPDGFEIKLPSEEEQSLEHFDAKNAKEFVNDVKCRFIQVNQRDKYGNFLNVLKDYKTQRIDAANLVNIMKEIFEGHGDLILRLNYFLPDGYEIKLPLEEEKSLEHFVAKNAKEFSNDVKCRFIQVNQRDKYENFLNVLKDYMTQRIDAANLVNIMKEIFEGHGDLILRLNYFLPDGYEIKLPLKEEQSHV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00273 347 Gene3D Paired amphipathic helix 267 331 IPR036600 GO:0006355
Mepo3g00273 347 Gene3D Paired amphipathic helix 181 245 IPR036600 GO:0006355
Mepo3g00273 347 SUPERFAMILY PAH2 domain 176 248 IPR036600 GO:0006355
Mepo3g00273 347 SUPERFAMILY PAH2 domain 266 334 IPR036600 GO:0006355
Mepo3g00273 347 ProSiteProfiles PAH domain profile. 256 333 IPR003822 GO:0006355
Mepo3g00273 347 Gene3D Paired amphipathic helix 95 159 IPR036600 GO:0006355
Mepo3g00273 347 ProSiteProfiles PAH domain profile. 173 247 IPR003822 GO:0006355
Mepo3g00273 347 SUPERFAMILY PAH2 domain 91 161 IPR036600 GO:0006355
Mepo3g00273 347 PANTHER SIN3B-RELATED 197 281 IPR039774 GO:0003714
Mepo3g00273 347 Pfam Paired amphipathic helix repeat 286 330 IPR003822 GO:0006355
Mepo3g00273 347 Pfam Paired amphipathic helix repeat 200 244 IPR003822 GO:0006355
Mepo3g00273 347 ProSiteProfiles PAH domain profile. 86 161 IPR003822 GO:0006355
Mepo3g00273 347 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00273 Mepo-Chr3 3646137 3649364 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00273 286 338 WRKY Transcription Factor Family AT4G12020 37.736 3.82e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo3g00273 PAH 6.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00273 K11644 - mtr:11428127 412.149