Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00270 ATGTATCTCAATGAAATAAAGGATGCGTTTAAAGATGAGATGCATAAGTATTATGAATTTTTAAGAGTCTTGAAAGATTTTGAGAAACGAAGAATTGATCTGGAGGGTGTGGTGGCAAGAGTGAAGGAATTTTTTCAAGGGCATGATGAATTGTTATTGAAATTTCAAACCTTTTTGCCAGATGGAATTGAAATCTCACTTCCACCAAAGAAACCAAAAGTGATCACTAAAGAATATGCTTTGAAATATGTAAGCAAGGTGAAGACTCGATTTCGATGTAATCCTCAGGTTTATGAATCGTTTTTAGACATACTGCGAATGTATAAAAACGACCATAAGAGTGTTAAGGAGCTCCACCAAACGGTTATTTCAATATTTCAAGACCACCAGGATCTTGTTGATGAGTTTACTCATTTTCTCCCATAA 426 0.3451 MYLNEIKDAFKDEMHKYYEFLRVLKDFEKRRIDLEGVVARVKEFFQGHDELLLKFQTFLPDGIEISLPPKKPKVITKEYALKYVSKVKTRFRCNPQVYESFLDILRMYKNDHKSVKELHQTVISIFQDHQDLVDEFTHFLP 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00270 141 ProSiteProfiles PAH domain profile. 71 141 IPR003822 GO:0006355
Mepo3g00270 141 Gene3D Paired amphipathic helix 1 60 IPR036600 GO:0006355
Mepo3g00270 141 PANTHER SIN3B-RELATED 2 141 IPR039774 GO:0003714
Mepo3g00270 141 Pfam Paired amphipathic helix repeat 96 140 IPR003822 GO:0006355
Mepo3g00270 141 Pfam Paired amphipathic helix repeat 15 59 IPR003822 GO:0006355
Mepo3g00270 141 FunFam Paired amphipathic helix protein Sin3 1 60 - -
Mepo3g00270 141 ProSiteProfiles PAH domain profile. 1 62 IPR003822 GO:0006355
Mepo3g00270 141 SUPERFAMILY PAH2 domain 75 141 IPR036600 GO:0006355
Mepo3g00270 141 Gene3D Paired amphipathic helix 80 141 IPR036600 GO:0006355
Mepo3g00270 141 FunFam Paired amphipathic helix SIN3-like protein 72 141 - -
Mepo3g00270 141 SUPERFAMILY PAH2 domain 2 61 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00270 Mepo-Chr3 3615385 3616594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00270 2 96 WRKY Transcription Factor Family AT4G12020 35.789 2.56e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo3g00270 PAH 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00270 K11644 - psat:127121411 175.252