Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00269 ATGAATCTGGAACATTGTGAAGTCAAAAAGGCCAAAGAATTTGTCAATGAAGTTAAGCATAGATTTATTCAAGATAACAGGAAGGATAAGTATGATGACTTTCTGAAAGTCTTGGTTGATTACAAGAAACAAAGGATCGATGCTGCAAATCACGGTAAATTTATGACGGGATTATTTGAAGGGCATAGAGATCTTTTATCAAGATTGAACTACTTCATGCCTGATGGATTTGAAATCAAGCTACCATCGGAGGAGGAACAATCTCTGGAACATTTTGAAGCTAAAAATGCCAGAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTATGATAACTTTCTGAATGTCTTGAAGGATTACAAGACACAAAGAATTGATGCTGCAAATCTTGTTATAATAATGAAGGAAATATTTGAAGGGCATAAATATTTAATGTTAAGATTAAATTACTTCCTGCCTGATGGATATGAAATCAAGCTTCCATCGGAGGAGGAACAGTCTCAGGAACATTGTGAAGCTAAAAATGCCAAAGATTTTGTCAATGAAGTTAAGCGCAGATTTATTCAAGTTAATGATAAGGATAAGTTGATAACTTTCTGA 621 0.3349 MNLEHCEVKKAKEFVNEVKHRFIQDNRKDKYDDFLKVLVDYKKQRIDAANHGKFMTGLFEGHRDLLSRLNYFMPDGFEIKLPSEEEQSLEHFEAKNAREFVNDVKCRFIQVNQRDKYDNFLNVLKDYKTQRIDAANLVIIMKEIFEGHKYLMLRLNYFLPDGYEIKLPSEEEQSQEHCEAKNAKDFVNEVKRRFIQVNDKDKLITF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00269 206 ProSiteProfiles PAH domain profile. 88 162 IPR003822 GO:0006355
Mepo3g00269 206 PANTHER SIN3B-RELATED 112 197 IPR039774 GO:0003714
Mepo3g00269 206 ProSiteProfiles PAH domain profile. 1 76 IPR003822 GO:0006355
Mepo3g00269 206 SUPERFAMILY PAH2 domain 91 163 IPR036600 GO:0006355
Mepo3g00269 206 Pfam Paired amphipathic helix repeat 115 159 IPR003822 GO:0006355
Mepo3g00269 206 Pfam Paired amphipathic helix repeat 29 72 IPR003822 GO:0006355
Mepo3g00269 206 Gene3D Paired amphipathic helix 10 74 IPR036600 GO:0006355
Mepo3g00269 206 Gene3D Paired amphipathic helix 96 160 IPR036600 GO:0006355
Mepo3g00269 206 SUPERFAMILY PAH2 domain 5 76 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00269 Mepo-Chr3 3602668 3603526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00269 11 86 WRKY Transcription Factor Family AT4G12020 34.211 6.01e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo3g00269 PAH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00269 K11644 - mtr:11428127 331.643