Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00250 ATGATGTTCCTCATACAAGTCATGTCAACTAGCAGCATTGACATAAATTGGTACGATGCTCATGCAACCTTCTATGGTGACGCAGCTGGTGGTGAAACCATGCAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGTCTTGCAACCGCAGCACTAAGCACTGCTCTATTCAATAATGGACTTACTTGTGGTGCATGTTTTCAAATATTTTGTGTCAATGACCCTCAATGGTGCATAAAGGGTGCACACCCAATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACTCGAAGACCACTGATATTTGGTGTAATCCTCCGCAAAAACACTTCGATTTAAGCTATAAAATGTTCACCTCTATTGCCTATTACAAAGCAGGTATCGTCCCCGTTAAATATCGACGTGTTCCATGCATCAAAAGTGGAGGTGTTAGATTTGAGCTCAAAGGAAACCCTTATTTCTTTCTAGTTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCTCATGTGAGTATTAGAGGGTCTAAGACTCGTTGGATTTCTATGTCACGCAAGTGGGGACAAAATTGGACTCCTGGATCTAATTTGGTAGGACAAGCCTTGTCGTTTCAGGTTAGTACAAGTGATGGAAAAACTTTAACGTTTGATTCAGTTGCTCCATCTAATTGGCAATTTGGACAGACTTATGAGGCCAAGGGAAATTTTTAG 723 0.4136 MMFLIQVMSTSSIDINWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATAALSTALFNNGLTCGACFQIFCVNDPQWCIKGAHPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGIVPVKYRRVPCIKSGGVRFELKGNPYFFLVLVYNVANAGDVSHVSIRGSKTRWISMSRKWGQNWTPGSNLVGQALSFQVSTSDGKTLTFDSVAPSNWQFGQTYEAKGNF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00250 240 PANTHER EXPANSIN-A15 14 237 IPR002963 GO:0009664
Mepo3g00250 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Mepo3g00250 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Mepo3g00250 240 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Mepo3g00250 240 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Mepo3g00250 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Mepo3g00250 240 PRINTS Expansin/Lol pI family signature 16 31 IPR007118 GO:0005576
Mepo3g00250 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Mepo3g00250 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Mepo3g00250 240 Gene3D - 147 240 IPR036749 -
Mepo3g00250 240 SUPERFAMILY Barwin-like endoglucanases 11 165 IPR036908 -
Mepo3g00250 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Mepo3g00250 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 35 147 IPR007112 -
Mepo3g00250 240 CDD DPBB_EXPA_N 17 142 - -
Mepo3g00250 240 SMART dpbb_1 52 137 IPR007112 -
Mepo3g00250 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 88 98 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 74 85 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Mepo3g00250 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Mepo3g00250 240 Pfam Lytic transglycolase 52 137 IPR009009 -
Mepo3g00250 240 Gene3D - 5 142 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00250 Mepo-Chr3 3422521 3423953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00250 6 240 Expansin Gene Family AT5G39280 66.809 4.48e-122 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00250 3 3422521 3423953 Mepo3g00250 3 3422521 3423953 ECH