Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00249 ATGGCTATGTCTAACACTTTGGTTCCTTTGGCCTTTTTCATGATGCTCTTCGTAAACGGCATGGCTGCCATTGACCCAAACTGGTATGATGCTCATGCAACCTTCTACGGTGATGCAGCGGGTGGTGAAACCATGCAGGGAGCTTGTGGTTATGGTGATCTCTTCAAACAAGGGTATGGCCTTGCAACTACGGCGTTAAGCACTGCTCTATTCAATAATGGATTTACTTGCGGTGCATGTTTTCAGATAACTTGTGTCGACGACCCTCAATGGTGCATAAAGGGTGCAAGCCCTATCACGATAACTGCAACAAATTTTTGTCCTCCAGATTACAGCAAGACCACTGACATTTGGTGCAACCCTCCACAAAAACACTTTGATTTAAGTTATAAAATGTTCACATCTATTGCCTACTACAAAGCAGGTGTCGTCCCCGTTAAATATCGACGTGTTCCATGCATCAAAACTGGGGGTGTTAGATTTGAAATCAAAGGAAACCCTAATTTTTTGCTTGTATTGGTGTTCAATGTTGCCAATGCTGGAGATGTTTCTCGTGTTAGTATCAAAGGGTCTAATACTGGATGGGTTCCCATGTCACGCAATTGGGGGCAAAATTGGAATATCGGAATAAATTTGGTAGGACAAGCCTTATCATTCCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTCAGATTCAGTGGCTCCTTCGAATTGGCAATTTGGGCAAACCTATGAGGGCAATGGAAATTTTTAG 756 0.4272 MAMSNTLVPLAFFMMLFVNGMAAIDPNWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATTALSTALFNNGFTCGACFQITCVDDPQWCIKGASPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGVVPVKYRRVPCIKTGGVRFEIKGNPNFLLVLVFNVANAGDVSRVSIKGSNTGWVPMSRNWGQNWNIGINLVGQALSFQVTTSDGKTLESDSVAPSNWQFGQTYEGNGNF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00249 251 SMART dpbb_1 63 148 IPR007112 -
Mepo3g00249 251 CDD DPBB_EXPA_N 28 153 - -
Mepo3g00249 251 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Mepo3g00249 251 Gene3D - 17 153 IPR036908 -
Mepo3g00249 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Mepo3g00249 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Mepo3g00249 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Mepo3g00249 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mepo3g00249 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Mepo3g00249 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Mepo3g00249 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Mepo3g00249 251 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Mepo3g00249 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Mepo3g00249 251 Pfam Lytic transglycolase 63 148 IPR009009 -
Mepo3g00249 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Mepo3g00249 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Mepo3g00249 251 Gene3D - 158 251 IPR036749 -
Mepo3g00249 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Mepo3g00249 251 PANTHER EXPANSIN-A15 12 248 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00249 Mepo-Chr3 3417600 3418702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00249 1 251 Expansin Gene Family AT5G39280 60.837 1.20e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00249 - - tpra:123886237 393.275