Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00248 ATGGCTTTATCTCACTCTTTGGTTCCTTTGACCTTTTTCATGATGCTCCTCGTACAAGCCATGTCAAATGGCATTGACTTCAATTGGTACGATGCTCATGCAACCTTTTATGGTGACGCCTCTGGTGCTGAAACCATGCAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGACTTGAGACCACAGCACTAAGCACTGCTCTATTCAATAATGGATTTACTTGTGGTGCATGCTATCAAATAATTTGTGTCAACGACCCTCAGTGGTGCATAAAAGATGCAGGACCAATCACAGTGACCGCAACAAATTTTTGTCCTCCAAATTACAACAAGCCCTCTGAAAATTGGTGTAACCCCCCACTAAAACACTTTGACCTAAGTTATAAAATGTTTACCTCTATTGCTTATTACAAAGCTGGTATCATCCCTGTTAAGTATAAACGTGTTCCATGTGTTAAAAATGGGGGTGTTAGGTTTGAACTCAATGGAAATCCTTATTTTTTGATTGTCTTGGTGTATAATGTTGCCGATGCCGGTGATGTTTCTCGTGTTAGTATCAGAGGGTCTAAGACAACCGGTTGGATTTCGATGTCACACAATTGGGGACAAAATTGGGACACTGAAGTGAATTTGTTAGGACAAAGATTGTCATTTCTTGTTACTACAAGTGATGGGAAGACTTTGGGTTTTCCTTTTGTTGCTCCTTCAAATTGGCAATTTGGTCAAACTTACGAGGGCAAGCAAAATTTTTAG 762 0.4042 MALSHSLVPLTFFMMLLVQAMSNGIDFNWYDAHATFYGDASGAETMQGACGYGDLFKQGYGLETTALSTALFNNGFTCGACYQIICVNDPQWCIKDAGPITVTATNFCPPNYNKPSENWCNPPLKHFDLSYKMFTSIAYYKAGIIPVKYKRVPCVKNGGVRFELNGNPYFLIVLVYNVADAGDVSRVSIRGSKTTGWISMSHNWGQNWDTEVNLLGQRLSFLVTTSDGKTLGFPFVAPSNWQFGQTYEGKQNF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00248 253 PANTHER EXPANSIN-A15 13 251 IPR002963 GO:0009664
Mepo3g00248 253 Pfam Expansin C-terminal domain 160 238 IPR007117 -
Mepo3g00248 253 Gene3D - 18 154 IPR036908 -
Mepo3g00248 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 249 IPR007117 -
Mepo3g00248 253 Gene3D - 156 253 IPR036749 -
Mepo3g00248 253 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Mepo3g00248 253 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Mepo3g00248 253 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Mepo3g00248 253 CDD DPBB_EXPA_N 29 154 - -
Mepo3g00248 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Mepo3g00248 253 Pfam Lytic transglycolase 64 149 IPR009009 -
Mepo3g00248 253 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Mepo3g00248 253 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Mepo3g00248 253 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Mepo3g00248 253 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Mepo3g00248 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Mepo3g00248 253 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Mepo3g00248 253 SMART dpbb_1 64 149 IPR007112 -
Mepo3g00248 253 SUPERFAMILY PHL pollen allergen 156 249 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00248 Mepo-Chr3 3409668 3410719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00248 23 253 Expansin Gene Family AT5G39280 66.667 5.54e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00248 - - gmx:100799337 379.407