Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00209 ATGACTAGGAAGAAAGTGAAAATCGCCTTTATTTTCAATGATTCAACAAGAAAGGAGACCTACAAGAGGAGGAAGAAAGGTATCATCAAGAAGGTGAGAGAACTCACTATTCTTTGTGGTATTCCAGCATGTGCTATAATTTCCGATCCTTTTGATTCTGAAACAGAGGTGTGGCCAAATCTAAAGGAAGCGAAACAGATGATTGAGAGGTATCAGAACTCATATATGAAAGATGAGAGAAAAAATGTGAACCAAGAAAGTTTCCTTTTGCAAAGGATTACTAAAGCTAGGGAACAACTAAGAATGCAAAGACACGACAATCATGAGAATGAGCTGAACATTCTTATGTTTTGGTACCTGCAAAACAACAAGCTGCCAGATGATGTAACCGTTTCTGATTTGAAAGACTTGGATAAGTTAATTGAAAAAAATATGAATGAAATTGATGACAAGATTGCTTCACTTAGTTTATCAAACTGA 480 0.3563 MTRKKVKIAFIFNDSTRKETYKRRKKGIIKKVRELTILCGIPACAIISDPFDSETEVWPNLKEAKQMIERYQNSYMKDERKNVNQESFLLQRITKAREQLRMQRHDNHENELNILMFWYLQNNKLPDDVTVSDLKDLDKLIEKNMNEIDDKIASLSLSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00209 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mepo3g00209 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g00209 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g00209 159 Coils Coil 61 81 - -
Mepo3g00209 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Mepo3g00209 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Mepo3g00209 159 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mepo3g00209 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g00209 159 PANTHER MADS BOX PROTEIN 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00209 Mepo-Chr3 2984265 2984744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00209 1 152 Type I MADS-box Gene Family AT5G48670 46.405 3.18e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo3g00209 SRF-TF 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00209 - - gmx:100792290 185.267