LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g00202	ATGGGTTGTGTAAACTCCAAGAAAGCTCTGACCGGAGAAAGCAATACGCTTTCTCCAGTTGGACCTTACGTTCATTCGAGTTCTTCTCGAAAAAGAAGCAATGGTTCAGGTAGAAGCATGGTGGTGGAGGCTTCTGCTCATTCTTCTAGAGGACAACATTCTAGACAACATTCTGGGGTTGTGACACAACATCCGGTTGACACGAAACCCGAGGAGTGGAAAAAGGGTGATTTGAATGTGAGGATTGGTTCACATAGGTTTGCTGAAGGTGAACAGATTGCTGCTGGTTGGCCTTCTTGGCTTACTTCTGTTGCTAGTGAAGCCATTCATGGTTTGGTCCCTCTCAAAACCGATGCTTTTGAGAAATTAGATAAGGTTGGACAAGGCACATATAGCAGTGTTTTCCAAGCACGTGAAGTCGAGACAGGGAGGATGGTTGCCTTAAAGAAGGTGCGTTTGGACACACTTCAACACGAGAGCATTCGGTTCATGGCACGGGAGATAATAATCCTCCGCACACTTGATCACCCAAACGTCATGAAATTAGAGGGTATAATCACTTCACAACTATCAAACAGTATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTATTATCTAACCCTGATGTCAAGTTCACAGACTCACAGATTAAGTGTTACATGAGACAGCTATTGAGTGGACTCGAGCACTTTCACCTACGAGGTATCATGCATCGAGACATTAAAGTATCAAATATATTAGTTAACAATGAAGGCATTCTCAAGATAGGGGACTTTGGATTAGCAAATACTGTTAGCCCAAATAGCAAGCACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGTCCTCCTGAGCTTTTGATGGGATCAACAAACTATGGAGTTACGGTGGATCTGTGGAGTGTAGGGTGTGTGTTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTGCACAAAATATTTAAGCTTTGTGGATCTCCACCTGAAGAGTTTTGGAAAAAGAATAAGCTTCCGCTTGCAACAATGTTTAAGCCTCAGATTAGTTACGAAAGCTCCCTTGAGGAGAGGTGTCAAGGTTTTCTTCCTGCAACTGCTGTGAGCCTACTTCAGACCTTACTCTCCGTTGATCCTTCCAAACGTGGTACTGCCTCCTCTGCACTTATGTCCGAGTATTTCAACACTGCGCCATATGCTTGTAACCCGTCACTCCTTCCAAAGTATATACCAAGCAAAGAAATGGATGCTAAAAACCGGGATGATGCGAACAGGAAAAAGAATGGAGGTAAAGTACGAGAGCGCGAGGCTGTAACATCAGGAAGGCAAAGACGGGAAATGCAGAATATTTCTCAAAACGCTCGTAAATGCGATGATGGTAAAGCACATCATACAAAAGGAAAAGTAGGACCTGTGCACAAAGAGCAACAAAAACATTTGTTTGATTCAAAATCAGATCAGGCTGCACAAAAGTCAAATGCTTACAATGGCTATAGTGCATACTCGGGACCAGTACCAGTCTCAGGATCTAGTGGCTTTAAATGGGCGAAAAGTAGAAAACCGGATGCTTCGTCCATTTTATCAGATGGATCAAGAAGCAAAATCAGTGCAATGGATCCAACTTTTGCAAAAGGCACATATGATTTAACGAAACACGGGATGGAAGTTTCGGAAAGAAGACATAATTACAACACAAGCCATGACGATGAGACCTCCAAGCGTGTAGTAAAAAAGCAGCAGGGTCGTAATGTAGAATCGTTTGATGTATCTGATATATACCATTCCAATTACTTCATGGATTTTGATCTCACAGACAAACCAGATGCTCAAATGAATCCACAGGACCACGGAAACCATGGTGAACCTGTGGAACAATCAGTACCAACTACGATCCAAACAAATAAAAACGATGAGTTGTTAGGTTGGAACGAAAACAAAGTGCGGCGGCAATCTGGTCGTAAATCAAGGCTGGGAATAGACAGCTTTGGCGATACTATCCCTCCTTTTGTTCATAAGAAAGTGTTCATACAGTTTTATCATGCATAG	2079	0.4281	MGCVNSKKALTGESNTLSPVGPYVHSSSSRKRSNGSGRSMVVEASAHSSRGQHSRQHSGVVTQHPVDTKPEEWKKGDLNVRIGSHRFAEGEQIAAGWPSWLTSVASEAIHGLVPLKTDAFEKLDKVGQGTYSSVFQAREVETGRMVALKKVRLDTLQHESIRFMAREIIILRTLDHPNVMKLEGIITSQLSNSIYLVFEYMEHDLAGLLSNPDVKFTDSQIKCYMRQLLSGLEHFHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTVSPNSKHPLTSRVVTLWYRPPELLMGSTNYGVTVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKNKLPLATMFKPQISYESSLEERCQGFLPATAVSLLQTLLSVDPSKRGTASSALMSEYFNTAPYACNPSLLPKYIPSKEMDAKNRDDANRKKNGGKVREREAVTSGRQRREMQNISQNARKCDDGKAHHTKGKVGPVHKEQQKHLFDSKSDQAAQKSNAYNGYSAYSGPVPVSGSSGFKWAKSRKPDASSILSDGSRSKISAMDPTFAKGTYDLTKHGMEVSERRHNYNTSHDDETSKRVVKKQQGRNVESFDVSDIYHSNYFMDFDLTDKPDAQMNPQDHGNHGEPVEQSVPTTIQTNKNDELLGWNENKVRRQSGRKSRLGIDSFGDTIPPFVHKKVFIQFYHA	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g00202	692	FunFam	probable serine/threonine-protein kinase At1g54610	203	445	-	-
	Mepo3g00202	692	MobiDBLite	consensus disorder prediction	522	542	-	-
	Mepo3g00202	692	MobiDBLite	consensus disorder prediction	424	453	-	-
	Mepo3g00202	692	MobiDBLite	consensus disorder prediction	460	496	-	-
	Mepo3g00202	692	CDD	STKc_CDK9_like	120	405	-	-
	Mepo3g00202	692	Pfam	Protein kinase domain	120	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g00202	692	ProSiteProfiles	Protein kinase domain profile.	120	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g00202	692	MobiDBLite	consensus disorder prediction	1	71	-	-
	Mepo3g00202	692	FunFam	probable serine/threonine-protein kinase At1g54610	107	202	-	-
	Mepo3g00202	692	MobiDBLite	consensus disorder prediction	8	63	-	-
	Mepo3g00202	692	SMART	serkin_6	120	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g00202	692	Gene3D	Transferase(Phosphotransferase) domain 1	203	444	-	-
	Mepo3g00202	692	SUPERFAMILY	Protein kinase-like (PK-like)	115	410	IPR011009	-
	Mepo3g00202	692	MobiDBLite	consensus disorder prediction	424	500	-	-
	Mepo3g00202	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	240	252	IPR008271	GO:0004672\|GO:0006468
	Mepo3g00202	692	Gene3D	Phosphorylase Kinase; domain 1	111	202	-	-
	Mepo3g00202	692	PANTHER	CELL DIVISION PROTEIN KINASE	118	409	-	-
	Mepo3g00202	692	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g00202	Mepo-Chr3	2905715	2910628	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g00202	117	446	Core Cell Cycle Gene Families	AT5G10270	46.532	1.58e-101	318

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Mepo3g00202		Pkinase	2.6e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g00202	-		-	lja:Lj1g3v2982400.1	927.546