Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00195 ATGGCAAGAAAGAGAAAGGTTTCTGAAACACTGGTTGAAGACATTAATCCTTATGAGACAATCAAGGAATGGAATGAGGTAATGAAGGAACCTAGTTCACTAGAAATAAGAAGCAGAAAGAGATTTGTTGGTGTGAGACAAAGGCCATCAGGAAAATGGGTAGCTGAGATAAAAGATACCATTCAGAAGATAAGAGTTTGGTTAGGAACTTTTGATTCAGCTGAAGAAGCTGCAAGAGCCTATGATGAAGCTGCATGTATACTCCGTGGTTCCAACACTAGAACAAATTTCTTACCTTGTTCTAAATCTTCCTCTAGTAATCGTGTTCTTTCTTCAAAGATCACTAATCTCCTCTTTCAAAAACTTAAAGAAAGGAATTATCCTTGCAGTTGTGGTCGCAGTTGCGAACCTTTAAATTGCGGTAAAATACAGGAAAGTGTGGCTGATGCGGACAAAATTGCCGCTGCGATTCCATTACCAAGACCTCAAAATCCTTTATATTGCAGTAAAATGCAAGAAAATGTGGCCAATACAGTCAAAGCCGCGGCAGTTATGCCGCATATACCTCAAAGTCCTTTATATTACGACTGGATTTGCAAACCTTTATATTATGGTAAAATGCAGGAAAATACGGCCGATGCGGTGGAAACTGCGGCTGCGATGCCGCAGAGACCCCAAAATTCTTTATATTGCGGCCAGATTTGCAGTTGTGGACCTCAATTTAAAACCATTTCTTCACCTTCTTGTTCTTCCAATTCTCTTTTTATCAACCAGCAACAAAAACAACAAGGAAATGTATATGGAAATGAATCAACATATTTCAGAAATGAACAATTTATTGATTTCTTTGATGGTCCTGAAGAAGATTGTTGCACAATTAACAGCATTGAATTTAGTAACAATAGTAGTGCACAAATTGACGGCATTACAAGTAGTTTTGAATCATGTTTAACTGAAAAAGATGAATTCAATTGCAAGGAAAAGGAAACTACATCAAGTGATGAAAGAGTGGAAGACATTGAAGAAAACACTGGTTTGAGTTTCAACCAAGATTTTCATTTCCTTGACAATGTTGATGATGCTGCAATGAACTATTATTCTGCTTTTAATATTGATCATGAAGATATTGAGAAGCATGTGGAGTTAGAGATCTATGATGATAATGATGAGTCTTCAATGCTAAGAGATGCTATGAAGAGAATGAAATATGAGAGGAAATTCTCAGCTTCTCTTTATGCTTTCAATGGAATACCTGAGTGCTTGAAGTTGAAACTTGAATCAGAAAACAAAATAGGAAGAGAGTTTTCTAATGAACTAACCAACCTCGAAAGAGCTTGTAGCAAAAAAAAAATGGATGCTTATAAGAAGGATGAATGA 1377 0.3646 MARKRKVSETLVEDINPYETIKEWNEVMKEPSSLEIRSRKRFVGVRQRPSGKWVAEIKDTIQKIRVWLGTFDSAEEAARAYDEAACILRGSNTRTNFLPCSKSSSSNRVLSSKITNLLFQKLKERNYPCSCGRSCEPLNCGKIQESVADADKIAAAIPLPRPQNPLYCSKMQENVANTVKAAAVMPHIPQSPLYYDWICKPLYYGKMQENTADAVETAAAMPQRPQNSLYCGQICSCGPQFKTISSPSCSSNSLFINQQQKQQGNVYGNESTYFRNEQFIDFFDGPEEDCCTINSIEFSNNSSAQIDGITSSFESCLTEKDEFNCKEKETTSSDERVEDIEENTGLSFNQDFHFLDNVDDAAMNYYSAFNIDHEDIEKHVELEIYDDNDESSMLRDAMKRMKYERKFSASLYAFNGIPECLKLKLESENKIGREFSNELTNLERACSKKKMDAYKKDE 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00195 458 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Mepo3g00195 458 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Mepo3g00195 458 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 408 - -
Mepo3g00195 458 SUPERFAMILY DNA-binding domain 41 97 IPR016177 GO:0003677
Mepo3g00195 458 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Mepo3g00195 458 FunFam ethylene-responsive transcription factor RAP2-11 40 99 - -
Mepo3g00195 458 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Mepo3g00195 458 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Mepo3g00195 458 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Mepo3g00195 458 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00195 Mepo-Chr3 2806699 2808075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00195 38 118 AP2-EREBP Transcription Factor Family AT5G19790 72.840 8.78e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g00195 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00195 K09286 - gmx:100796159 195.667