Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00146 ATGAATATGGGAGATGAAATCACTATACACCAAGTTGAACTCCCCATTGAAGAATTGAGTGCATATCTACAAGAACAAGAAGTTGGAAAGATAGCAGAATGTCGCTATTGTCATGAAGAAGAATGGATCTATAGACTTGAAGCACCATGTAGGTGTGATGGCAGCTTAAAGTATGCTCACAGGAGATGTATTTCCCATTGGTGCAACGTCAAACGCAGCATAAGATGTGAGATCTGCCGTGAGGTTTTCTCTCCAAACTTTTCAGTGACTGAACCACCTCCTCTTGAAGAAGACGACATTCCCGTAAGTGATCGCTGGACGATCCCTAACACAAACATTGGAGTGGTGTCACCACTAAGACTGATTGAGCGAGGCAATAATCGCCTCATCCGATCTATGGTACTTAACACTGCTGGAGGCGTCATTTTTGGGACGCTACTTCTCATGTTCCTTGCATCAATGATTATAAGGGATGCATATTATTTGACACCACCCAAGGAGGATATGTTTTCTCGCATTGTGTACCTTACTGTGGTGTTTATCACTGTGCCCCTATATGTTTTCTACTGGATTTTGGCTTGCAGAGGCCAACAAGAGCTCGACCGCATCGACAGGGAGAGGGAGATGGAGATGGAGAGGGAGATGTGA 648 0.4444 MNMGDEITIHQVELPIEELSAYLQEQEVGKIAECRYCHEEEWIYRLEAPCRCDGSLKYAHRRCISHWCNVKRSIRCEICREVFSPNFSVTEPPPLEEDDIPVSDRWTIPNTNIGVVSPLRLIERGNNRLIRSMVLNTAGGVIFGTLLLMFLASMIIRDAYYLTPPKEDMFSRIVYLTVVFITVPLYVFYWILACRGQQELDRIDREREMEMEREM 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00146 215 CDD RING_CH-C4HC3_MARCH 34 80 - -
Mepo3g00146 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 92 IPR013083 -
Mepo3g00146 215 ProSiteProfiles Zinc finger RING-CH-type profile. 26 86 IPR011016 GO:0008270
Mepo3g00146 215 SUPERFAMILY RING/U-box 33 83 - -
Mepo3g00146 215 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 24 194 IPR033275 -
Mepo3g00146 215 SMART ringv_2 33 80 IPR011016 GO:0008270
Mepo3g00146 215 Pfam RING-variant domain 34 79 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00146 Mepo-Chr3 2187451 2190966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00146 3 87 C3H Transcription Factor Family AT2G22120 29.545 9.53e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00146 - - mtr:112416323 397.897