Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00143 ATGGCCGAAGAAGAAGAAATGGTTGTAGCGGCACCCGATTGTAAGCGAAAGTTCGAAGATTTACACTCTGGTGACGGGGAGAACAAGCGTCATCGTCTTCACGACGATAACCAGAATCACCTAGAGGAAAACACTTCCTTGGAGGAAGTTCAAGATGTATCTAAAGATAATACAGAAGAAACTACTGACCCTATGAATACCAAAGAGATTCATGTTGATTCCAGCTCTATTGATCCCAACTTTCTGCATGATGCTTCTTCTAGACAAAAGCAACCTATATCCGGCTCTGACATAACAACCGCACGAGAAATTGAGGTTCCTAGAAATAAGGAGTTAAATTTGAAGGATCTTTTGGGAAGTATATATGAGTTCGAAAACCTAATGAATGCCATGTTTCCAGAGGCTGATGCTGGAGGTTCTCTTGCACTGTTAGATCAAGTCCTCTCCCCTACACAGGATATTGTGGAATCCGATCAAATTCAGACACAAGTTCCAAATGAGAAGGAGTTCAATTTAAATGATTTTTTGGAAAGTATAGATAAGGCAGAAAAGCTATTGAATGCCATGATTGCAGAGGATGATGCTGGAGGTTCTCCTGCATTTGTAGCTCGAGGCCTCTCCCCTGCTAATGCTATCGGTGGATCTGATCAAATTCAAATACAAGTTCCAAATGAGAAGATGCCAAGGGGAAAGGCAAATTGTTCATTAGTTGCTAAGAAATCTGAGCCTGAACCTGAGCCTGAGCCTGAAAAGACAGTTGAATCTGATGAGAAGGTCGACCTTGAAGAGGAAAATGATCCCGAGGAAGAAATGGAAGAGATTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAGGAGGAGGACGCGGAGGAGGAAGAGGAAGAAGAAGATGATGCCATGCAAAACCTTGATGATGATGATGAGAAAAAAAAGCACGCTGAACTTCTTTCTCTTCCTCACCACAAGTCTGAAGTATACGTTGGTGGCATTCCTCTAGATGCCAAAACTGAAGATTTGAAAGAATTTTGTGAGCGTATTGGGAAAGTTGTACAGGTTCGAATATTTAAAGGAAAGGATGCTTCTGAGAACAAGGGCTTTGCTTTTGTTACTTATAGAAGTATAGAACTGGCTTCTAAAGCCATTAAGGAGCTGAATAATACCGAATTTAAGGCTGGGAAAATAAAATGTTCTAAATCTCAAGCAAAAAATCGTCTTTTTATTGGTAATATTCCTAGAAGCTGGGGCGAAAAAGACCTGAAGAAGGTTGTGACTGACATTGGACCTGGAGTTACTGCTGTTGAACTAATCAAGGATATGAAGAACATTAGCAATAACCGTGGCTATGGTTTTATCGACTATCATAATAATCAGTGTGCTGAATATTCAAGGCAAAAGATGACGAGCCCATCATTTAAGCTTGGTGACAATTTCCCAACAGTGAACTGGGCTGAACCCAAAAATGCTGATTCCTCTGCTTCATCCCAGGTGAAGGAAGTATATGTGAAGAACCTTCCCAAGAATGTGACTCAAGAGCAGTTGAAGAAGCTTTTTGAATACCATGGGAAGATCACAAAGGTGGTTCTACCGCCACCAAAGCCTGGTCAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGATCAAATGCTATGAAAGTGCTAAAAAACACTGAAAAATATGTATTAGATGGTCAAATTTTAGAGTGTTCGTTAGCAAAACCACAGGCTGATCAGAAGGCCGTAGTATCAAATATACAGACACAAGGATCGCTTCCAAGTTATCCGCCACATGTCGGTTATGGTTTGGTTGGGAATCCCTATGGTGCACTTGGTGCAGGATATCGTGCTCCTGGTCTTGCTCAGCCTTTGATGTATGGACGGGGTCAAACTCCTGGTGGAATCGCCATGATGCCAAAGCTTCTGGTTGATAGACGCATCAAATATGTCTTGCAACAACCAGGATTGCAGCCACACACCCTGCACACCCCACCTTCACATCAAAGAGGTGGCATGAGTGGCGGCGGTGGTAGTGGGAGGGGGAGTAGTGGTGGATGGCACATCAATGATAGTGTCTCAGGGCTCATATACCACCCATATTAG 2133 0.4248 MAEEEEMVVAAPDCKRKFEDLHSGDGENKRHRLHDDNQNHLEENTSLEEVQDVSKDNTEETTDPMNTKEIHVDSSSIDPNFLHDASSRQKQPISGSDITTAREIEVPRNKELNLKDLLGSIYEFENLMNAMFPEADAGGSLALLDQVLSPTQDIVESDQIQTQVPNEKEFNLNDFLESIDKAEKLLNAMIAEDDAGGSPAFVARGLSPANAIGGSDQIQIQVPNEKMPRGKANCSLVAKKSEPEPEPEPEKTVESDEKVDLEEENDPEEEMEEIEYEEVEEEEEVEEIEEEVEEEEEDAEEEEEEEDDAMQNLDDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCERIGKVVQVRIFKGKDASENKGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELIKDMKNISNNRGYGFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEPKNADSSASSQVKEVYVKNLPKNVTQEQLKKLFEYHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKVLKNTEKYVLDGQILECSLAKPQADQKAVVSNIQTQGSLPSYPPHVGYGLVGNPYGALGAGYRAPGLAQPLMYGRGQTPGGIAMMPKLLVDRRIKYVLQQPGLQPHTLHTPPSHQRGGMSGGGGSGRGSSGGWHINDSVSGLIYHPY 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00143 710 SUPERFAMILY RNA-binding domain, RBD 334 499 IPR035979 GO:0003676
Mepo3g00143 710 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 496 605 - -
Mepo3g00143 710 MobiDBLite consensus disorder prediction 259 313 - -
Mepo3g00143 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 585 IPR000504 GO:0003723
Mepo3g00143 710 Gene3D - 254 413 IPR012677 -
Mepo3g00143 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 411 IPR000504 GO:0003723
Mepo3g00143 710 SMART rrm1_1 508 581 IPR000504 GO:0003723
Mepo3g00143 710 SMART rrm1_1 414 491 IPR000504 GO:0003723
Mepo3g00143 710 SMART rrm1_1 334 407 IPR000504 GO:0003723
Mepo3g00143 710 MobiDBLite consensus disorder prediction 68 98 - -
Mepo3g00143 710 SUPERFAMILY RNA-binding domain, RBD 500 604 IPR035979 GO:0003676
Mepo3g00143 710 Coils Coil 269 319 - -
Mepo3g00143 710 Gene3D - 414 493 IPR012677 -
Mepo3g00143 710 MobiDBLite consensus disorder prediction 8 67 - -
Mepo3g00143 710 Coils Coil 172 192 - -
Mepo3g00143 710 MobiDBLite consensus disorder prediction 1 102 - -
Mepo3g00143 710 CDD RRM_SF 335 407 - -
Mepo3g00143 710 MobiDBLite consensus disorder prediction 665 697 - -
Mepo3g00143 710 MobiDBLite consensus disorder prediction 241 258 - -
Mepo3g00143 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 477 IPR000504 GO:0003723
Mepo3g00143 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 576 IPR000504 GO:0003723
Mepo3g00143 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 335 401 IPR000504 GO:0003723
Mepo3g00143 710 SMART rrm2_1 334 407 IPR003954 GO:0003676
Mepo3g00143 710 SMART rrm2_1 508 581 IPR003954 GO:0003676
Mepo3g00143 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 495 IPR000504 GO:0003723
Mepo3g00143 710 MobiDBLite consensus disorder prediction 238 313 - -
Mepo3g00143 710 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 199 595 - -
Mepo3g00143 710 Gene3D - 494 605 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00143 Mepo-Chr3 2058329 2069847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00143 349 668 Eukaryotic Initiation Factors Gene Family AT4G34110 22.792 3.27e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00143 K13161 - gmx:100806658 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04665 1 54500777 54507139 Mepo3g00143 3 2058329 2069847 PCT