Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00141 ATGGACATAACCTTAACCCCAACACCCACACCAGCACCAACATCAATAGCACCAACCATATTAACAACATCTACAACAACCTTAACTAAATCACCAGAACAACAACATGAAACTGAAACACCCACAAAATTCACAACCTCAACAACCCCAAAAATCTCACCTTTTTCAAATGGTGTTCTCAAACGTTTCCACCACCACCACCACCACTTCAACCACCACAACAACCACCAACCTACCATAACCTACAAAGAATGTCTCAAAAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGCTGTGGTGAATTCATGACATCTCCAACAGCAACACCAACCGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGAACCTGAAGAGCCACCACTTTCCACCACAACACATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTCTCTCACCGGAGCCCAAATTCCTCCTCTCCACCACCGATCTCATCCTCTTACTACCCCTCTGCCCCTCACATGCTTCTTGCTCTCTCCGCCGCCTTACCGGAAAACGTCGCAGCTCCAAACCAAACCATGTTGATGAATTCTCACTCCAACAATTCTAGAAAGCGTTTCAGGACAAAGTTTACTCAAGATCAGAAGGAGAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTGTTCATGAGTTTTGTAATGAGATTGGTGTTGATCGTAGTGTTCTTAAGGTTTGGATGCATAACAATAAGAACACTTTAGCTAAACGAGAAAACATTAACACTAACAATGATATTAATGATGGTGTTAAGAGTTTTCAGCTACCTCTTGAAGATGAAGAACACAAGAATAGTGTTGAGATTCATGGTCTTAATCACAATCATTATCAGAATGAAAGTGGGGTTGTTGGAGTAACTGTTCGTGCTAATGGTTCATCATCTTCTTCTTAA 1011 0.4293 MDITLTPTPTPAPTSIAPTILTTSTTTLTKSPEQQHETETPTKFTTSTTPKISPFSNGVLKRFHHHHHHFNHHNNHQPTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSHRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVAAPNQTMLMNSHSNNSRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDDEFVHEFCNEIGVDRSVLKVWMHNNKNTLAKRENINTNNDINDGVKSFQLPLEDEEHKNSVEIHGLNHNHYQNESGVVGVTVRANGSSSSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00141 336 Pfam ZF-HD protein dimerisation region 80 134 IPR006456 -
Mepo3g00141 336 FunFam Zinc-finger homeodomain protein 2 202 276 - -
Mepo3g00141 336 MobiDBLite consensus disorder prediction 1 52 - -
Mepo3g00141 336 SUPERFAMILY Homeodomain-like 207 276 IPR009057 -
Mepo3g00141 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 274 - -
Mepo3g00141 336 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 81 133 IPR006456 -
Mepo3g00141 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 133 IPR006456 -
Mepo3g00141 336 MobiDBLite consensus disorder prediction 150 177 - -
Mepo3g00141 336 MobiDBLite consensus disorder prediction 153 168 - -
Mepo3g00141 336 NCBIfam homeobox domain, ZF-HD class 215 272 IPR006455 -
Mepo3g00141 336 Gene3D - 202 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00141 Mepo-Chr3 2018676 2020213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00141 20 279 ZF-HD Transcription Factor Family AT5G15210 50.746 2.32e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo3g00141 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00141 - - psat:127128550 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00141 3 2018676 2020213 Mepo3g00141 3 2018676 2020213 ECH
Mepo5g03641 5 45147255 45148815 Mepo3g00141 3 2018676 2020213 PCT