Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00137 ATGTCTAGTCGAAGGAGGCAACAATCAGGAGGGTCTACTCAGATCTCTGATGACCAAATCATCGACCTTGTTTGCAAATTGCGTCAACTTGTTCCTGAGATTCGTAATAGGCGCTCTGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACCTGCAACTATATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCCTGAGATTGTCTCAGTTGTTGGCCACAATTGATTCTGATAGTGCTGAAGCTTCAATCATTAGGAGCCTACTTAACCAATGA 279 0.4229 MSSRRRQQSGGSTQISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00137 92 Coils Coil 48 75 - -
Mepo3g00137 92 FunFam Transcription factor ILI6 4 87 - -
Mepo3g00137 92 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Mepo3g00137 92 CDD bHLH_AtPRE_like 11 75 - -
Mepo3g00137 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mepo3g00137 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Mepo3g00137 92 Gene3D - 2 88 IPR036638 GO:0046983
Mepo3g00137 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00137 Mepo-Chr3 1892013 1895361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00137 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 71.250 2.10e-33 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g00137 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00137 - - cill:122307724 142.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00137 3 1892013 1895361 Mepo3g00137 3 1892013 1895361 ECH
Mepo5g01826 5 19829302 19830272 Mepo3g00137 3 1892013 1895361 ECH
Mepo5g03653 5 45471693 45474859 Mepo3g00137 3 1892013 1895361 PCT