Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00131 ATGGCATTCCCACCACCTCATAGTTTCATGTTTAACAATCATGAAGATCATGATCAACTCCCTTCAACTTCTCTCAACACCTTCCCTTCTTTTCCACCTCAACACTTTCAACAAGGTGCACCTTTTTTGCTGAAGAAATCAATGTCATTTTCTGGCATTGAGAACAAGTGTCATGATCATTATGAACTGCATGGCGACGATGAGTTATCTGATGATGGATTCCAAAGTGGAGAGAAGAAGAAGATCAGGCTGAATTTGGATCAAGTGAGGGCCCTTGAGAAGAGCTTTGAATTTGGGAACAAGCTTGACCCAGAAAGAAAAGTGCAACTTGCTAAGGCTTTAGGGTTGCAGCCAAGACAAATTGCTATATGGTTTCAGAATAGAAGAGCAAGATGCAAAACAAAGGAACTTGAGAAAGAATATGAAGTCCTCAAGAAGAAATTTGAAGCTGTCAAGGATGAAAATGATGCACTTAAAGTTCATAATCAGAAACTACAAGGAGAGTTACAAGCATTAAAAAGCAAGGACTGGTGTGAAGGTGGAACAAAATGCCTAATGAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGTGATAATAGCTTAAACATTAATTTAGATCTCTCAAGAACACAAGCTTTGAACAGTACTGTTTCTTCACAGAATGGTAGAAACCTAATTAGCCTTCTACCAACTTCATTAAATCCTAACAACATACCCCAACTTCTTCAATTCACATCAAGACCAGATCTTCAAGATGAAAACTTCAGCAACATGTTTCACAACATTGATGAGCATCAGACCCTCTGGCCTTGGACATAG 819 0.3895 MAFPPPHSFMFNNHEDHDQLPSTSLNTFPSFPPQHFQQGAPFLLKKSMSFSGIENKCHDHYELHGDDELSDDGFQSGEKKKIRLNLDQVRALEKSFEFGNKLDPERKVQLAKALGLQPRQIAIWFQNRRARCKTKELEKEYEVLKKKFEAVKDENDALKVHNQKLQGELQALKSKDWCEGGTKCLMKETEGSWSNGSDNSLNINLDLSRTQALNSTVSSQNGRNLISLLPTSLNPNNIPQLLQFTSRPDLQDENFSNMFHNIDEHQTLWPWT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00131 272 SUPERFAMILY Homeodomain-like 67 136 IPR009057 -
Mepo3g00131 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 216 IPR045224 GO:0003700
Mepo3g00131 272 Pfam Homeodomain 79 133 IPR001356 GO:0003677
Mepo3g00131 272 Pfam Homeobox associated leucine zipper 135 175 IPR003106 GO:0006355|GO:0043565
Mepo3g00131 272 SMART HOX_1 77 139 IPR001356 GO:0003677
Mepo3g00131 272 MobiDBLite consensus disorder prediction 1 24 - -
Mepo3g00131 272 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Mepo3g00131 272 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Mepo3g00131 272 Gene3D - 46 140 - -
Mepo3g00131 272 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Mepo3g00131 272 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Mepo3g00131 272 CDD homeodomain 79 136 IPR001356 GO:0003677
Mepo3g00131 272 Coils Coil 127 175 - -
Mepo3g00131 272 FunFam homeobox-leucine zipper protein ATHB-6-like 83 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00131 Mepo-Chr3 1835814 1839473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00131 1 272 Homeobox Transcription Factor Family AT3G01220 44.444 5.34e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo3g00131 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00131 K09338 - gmx:100797920 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00131 3 1835814 1839473 Mepo3g00131 3 1835814 1839473 ECH
Mepo5g03656 5 45537550 45540824 Mepo3g00131 3 1835814 1839473 PCT