Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00110 ATGGCTGGAAGTGCAATGAAGATTAGCTTTATTTTGTTGGTTTTGGCCATAACTATTCCATGCCTTGAAGGTCGTATTGGTGAATTTGATGATTACCTCAAAGCACAAGCTGATTTGGCTCGTCAAATTGCTTTCAAGTCCTTTGTACCCAATCCTGAAAACATTACACACGAGATCAATCTTCACGTTCATTTGGCAATGGAAGCGGCAATGAAAGCAGAAGGAAATTTAAATGACACAAGGAGGGAACTAATGAGCCAAAAAACACGTGGTGGTAGAGGTCGTAGAGGTCGTGGAGCAAGATGTATGGCCACCAATCCAATTGACAGTTGTTGGAGGTGTAGAAAAGATTGGGCCCAAAACCGTCAACTATTAGCCAAATGTGCAAAAGGATTCGGTAGAAGGACCACAGGAGGACTTGGTGGAAGGATCTATGTTGTCACAGATCCTTCCGACAACGATATGGTGAACCCAAGACCTGGCACTCTCCGATTTGGTGCCGTTCAAAAGGGACCACTTTGGATTATTTTCCAACGTAGCATGGTCATTACATTGACTCAAGAGTTAATGGTTTCATCTGACAAGACCATCGACGGTCGTGGAGCCAATGTGCAAATTAGGGAAGGTGCTGGAATTACCATGCAATTCGTGAACAATGTCATCATTCACGGTCTTCGCATCAAGAACATTAAAGCTAGGAATGGTGGTTTGATTAGAGACTCTTTTGATCATATTGGAGTAAGAACAAGGAGTGATGGTGATGCTATCTCTGTCTTTGGTTCATCAAACATTTGGATTGATCATATTTCCTTATCTAATTGTGAGGATGGTCTTGTTGATGTCATTCAAGGCTCTACTGCAGTCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTGTTTGGAGCTAGTGATACATATCAAGATGACAAGATTATGCAAATCACAGTTGCATTCAACCATTTTGGACAAGGATTGATTCAAAGAATGCCAAGGTGCAGATGGGGATTTTTCCATGTTTTGAACAATGATTACACACATTGGATCATGTATGCAATTGGTGGAAGCTCAGCCCCAACAATTCTTAGTCAAGGAAACCGTTTCATTGCTCCTAATAACAATGCTGCAAAAACAATTACACACAGAGATTATGCACCAGAAGCTGTTTGGTCAAAATGGCAATGGAGATCAGAAAGTGATCATTTCATGAATGGTGCTACATTTATTCAATCTGGTCCTCCTATTAAGAATCTTCCATTCAAAAAAGGGTTCCTAATGAGACCAAGGCATGGATCTCAGGCTAATAGGCTTACACGCTTTTCTGGGGCACTCAATTGTGTTGTGGGTAGGCCATGCTAG 1368 0.4152 MAGSAMKISFILLVLAITIPCLEGRIGEFDDYLKAQADLARQIAFKSFVPNPENITHEINLHVHLAMEAAMKAEGNLNDTRRELMSQKTRGGRGRRGRGARCMATNPIDSCWRCRKDWAQNRQLLAKCAKGFGRRTTGGLGGRIYVVTDPSDNDMVNPRPGTLRFGAVQKGPLWIIFQRSMVITLTQELMVSSDKTIDGRGANVQIREGAGITMQFVNNVIIHGLRIKNIKARNGGLIRDSFDHIGVRTRSDGDAISVFGSSNIWIDHISLSNCEDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDTYQDDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSAPTILSQGNRFIAPNNNAAKTITHRDYAPEAVWSKWQWRSESDHFMNGATFIQSGPPIKNLPFKKGFLMRPRHGSQANRLTRFSGALNCVVGRPC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00110 455 PANTHER PECTATE LYASE 18-RELATED 41 453 IPR045032 GO:0030570
Mepo3g00110 455 Pfam Pectate lyase 188 371 IPR002022 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 128 145 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 188 204 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 152 177 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 252 273 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 354 373 IPR018082 -
Mepo3g00110 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Mepo3g00110 455 SUPERFAMILY Pectin lyase-like 106 446 IPR011050 -
Mepo3g00110 455 Gene3D - 105 448 IPR012334 -
Mepo3g00110 455 Coils Coil 70 90 - -
Mepo3g00110 455 SMART amb_all 180 377 IPR002022 -
Mepo3g00110 455 Pfam Pectate lyase, N terminus 26 84 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00110 Mepo-Chr3 1522564 1524526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00110 10 455 Polysaccharide Lyase AT1G14420 56.291 0.0 522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g00110 3 1522564 1524526 Mepo3g00110 3 1522564 1524526 ECH