Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00031 ATGGCATCAACATCATGTTTTTTCAACAACAATGAATTCCCTATGAAAGTGGTAGCTCCTATGTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAGCTCTTTATGCTTACATTGGAGAAGCTTCATGCTTCTATGGGTACTAAGTTCATGGTTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACAAATGCCTCCTTTGTGCTCAGAAAATACTATTCATCATTGCTTTATCACTATGAGCAAATCTACTATTTTAGATCCAAACGGTGGACCCCTGCATCTTCTGATGCTTTGCAGAATCAATCAACCATGTCAGTTCCTGCTTCAATAACACAATTTTTGCAGCCTTCTCCAGGAACACATCCAGTTGATTTTCAGAAGTCAGGGGTTAATGCTTCTGAATTGCCTCAAGTGTCTTCTTCTGGATCTTCACTTGTTGGAGTTATTGATGGAAAGTTCGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGTGTACTATATGAGTCTCCACAAAGCATTAAGATTAATAATAACAATATTGCATCTGCTGCATTGGGTGTCCAACGCCGCCGTCGGAGGAGGAAGAAGTCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGCTACTGAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAGAAAACAGTTTATCAAGAAAAGGCTATTAAGGATAAAGAAAGGTACCAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAACCGACAGCGCAGGGCCACTGCAACAACGGTTTTCGGAAGGAGATTCAGCTTTGGTGGACGTTGACATAAAAATGCACGATTCTTGTCAGACTCCCGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGCAGATGATATCAACATGGATGCTTCTTCCGGTGGAGCAAGAGTGGATTCTGAAGCTTTTGTTGATTCAGACAAGGCAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGAGGAATTCAACAGACACAAAAGATGAATGAGAGCCAAAACATGTTATCCCTACTTTAG 1314 0.4049 MASTSCFFNNNEFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMVPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASFVLRKYYSSLLYHYEQIYYFRSKRWTPASSDALQNQSTMSVPASITQFLQPSPGTHPVDFQKSGVNASELPQVSSSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIKINNNNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDSAGPLQQRFSEGDSALVDVDIKMHDSCQTPEESSSGESDYVADDINMDASSGGARVDSEAFVDSDKATKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00031 437 Gene3D High mobility group box domain 240 335 IPR036910 -
Mepo3g00031 437 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Mepo3g00031 437 SMART bright_3 37 128 IPR001606 GO:0003677
Mepo3g00031 437 MobiDBLite consensus disorder prediction 235 262 - -
Mepo3g00031 437 CDD HMG-box_AtHMGB9-like 256 322 - -
Mepo3g00031 437 FunFam High mobility group B protein 15 30 144 - -
Mepo3g00031 437 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 323 IPR009071 -
Mepo3g00031 437 SMART hmgende2 255 324 IPR009071 -
Mepo3g00031 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 361 - -
Mepo3g00031 437 Gene3D - 29 145 IPR036431 GO:0003677
Mepo3g00031 437 SUPERFAMILY ARID-like 35 133 IPR036431 GO:0003677
Mepo3g00031 437 SUPERFAMILY HMG-box 244 327 IPR036910 -
Mepo3g00031 437 SMART ARID_2 33 123 - -
Mepo3g00031 437 MobiDBLite consensus disorder prediction 236 250 - -
Mepo3g00031 437 Pfam HMG (high mobility group) box 256 323 IPR009071 -
Mepo3g00031 437 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Mepo3g00031 437 Coils Coil 305 325 - -
Mepo3g00031 437 PRINTS High mobility group (HMG1/HMG2) protein signature 288 307 - -
Mepo3g00031 437 PRINTS High mobility group (HMG1/HMG2) protein signature 307 327 - -
Mepo3g00031 437 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00031 Mepo-Chr3 475611 479458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00031 1 356 ARID Transcription Factor Family AT1G04880 54.813 5.09e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo3g00031 ARID 3.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00031 - - gmx:100783284 487.263