Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo3g00024 | ATGTCAGGAATCTGTTCTGCTTTTAACACCCCCAGGTTTGTTCTTAACAAGTTTTTAGCCAAATCTCAACGTGAAGGAGATGGTGCTGTTGTTAGAAGAGGCATTGGAAGAAGTGAGTTGAAGAACTTGGATCCTTTTCTAATGTTGGATCACTTCTCAGTATCTCCTCCTGGAGGATTTCCTGATCATCCACACAGAGGTTTTGAGACAGTCACCTACATGCTAGAGGGAGGTATAACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAACTGGTGATGTTCAGTGGATGACTGCAGGGAGGGGAATTATTCACTCTGAAATGCCTGCAGAAGCAAAAAACAATGGACTGCAATTGTGGATCAATTTAGCAGCTAATGACAAAATGATTGAGCCAAACTATCAAGAACTTCTAAGTGAGAACATACCATCAGGAGAAAAAGATGGTGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGAATTCACCTGTCTACACAAGAACACCAACCATGTTCCTTGATTTCACCATGATGCCAGGAACTCAAGTTCATCAAACTATTCCTGAGTTATGGAATTCATTTGCATACATAATTGAAGGAGAAGGTGTTTTTGGTTCACCAAATTCATCACCAATTGTGGCTCACCATATCACTGTTTTCACTCAAGGTGATGGACTTAGTGTTTGGAATAATAACTCTTCAAAGCCTTTGAGGTTTGTGCTCATTGGTGGACAACCATTGAATGAACCTATTGCTCAATACGGTCCTTTTGTCATGAATACACAATCTGAGATTGAGAAGACTATTGAAGACTATCAATATGGTAGGAATGGTTTTGAGATGAGGCTAAATTATAGGTCTCAATAG | 879 | 0.4016 | MSGICSAFNTPRFVLNKFLAKSQREGDGAVVRRGIGRSELKNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAEAKNNGLQLWINLAANDKMIEPNYQELLSENIPSGEKDGVEVRVIAGESMGVNSPVYTRTPTMFLDFTMMPGTQVHQTIPELWNSFAYIIEGEGVFGSPNSSPIVAHHITVFTQGDGLSVWNNNSSKPLRFVLIGGQPLNEPIAQYGPFVMNTQSEIEKTIEDYQYGRNGFEMRLNYRSQ | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo3g00024 | 292 | PANTHER | PIRIN-RELATED | 8 | 291 | IPR012093 | - | |
| Mepo3g00024 | 292 | Gene3D | Jelly Rolls | 145 | 251 | IPR014710 | - | |
| Mepo3g00024 | 292 | Gene3D | Jelly Rolls | 25 | 277 | IPR014710 | - | |
| Mepo3g00024 | 292 | CDD | cupin_pirin_C | 173 | 250 | - | - | |
| Mepo3g00024 | 292 | CDD | cupin_pirin_N | 29 | 125 | - | - | |
| Mepo3g00024 | 292 | Pfam | Pirin | 32 | 123 | IPR003829 | - | |
| Mepo3g00024 | 292 | FunFam | pirin | 25 | 155 | - | - | |
| Mepo3g00024 | 292 | SUPERFAMILY | RmlC-like cupins | 12 | 287 | IPR011051 | - | |
| Mepo3g00024 | 292 | PIRSF | Pirin | 10 | 289 | IPR012093 | - | |
| Mepo3g00024 | 292 | Pfam | Pirin C-terminal cupin domain | 176 | 282 | IPR008778 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo3g00024 | Mepo-Chr3 | 395086 | 397728 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo3g00024 | 9 | 285 | Calmodulin-binding Proteins | AT3G59220 | 65.468 | 2.68e-138 | 390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo3g00024 | K06911 | - | gmx:100775597 | 501.13 |