Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00008 ATGGAGAAGATGAATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATCCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACCAAAGAAGCGAAATACCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGAGTCATGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCTCCTCATGGTTCAAGAACTGATTGGATTATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGAAGAGGTGGTGCTAAAAATGGAGAGGAGAGAGTAGTCAAAGGAGTGAAGCCAAGCAGTGGCAGCAACTTTGGTGAGGTGAAGAAGAAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTTTATGATTTCTTGGCAGAGAAGAAGAACAACACTGATGGATCCTCCTCCTCAATCACAATCTCACCAGCTAGCAGTGGAATCACAAATGAATTGGATGAACATGAGAATGAAGACAGTAGTAACTCATTCACAGTGCTCCCATCCTCTTTTGGAAATGCTTAA 762 0.4108 MEKMNFVKKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIMNSKSHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEERVVKGVKPSSGSNFGEVKKKNSASSSKVVVFYDFLAEKKNNTDGSSSSITISPASSGITNELDEHENEDSSNSFTVLPSSFGNA 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00008 253 SUPERFAMILY NAC domain 11 159 IPR036093 GO:0003677|GO:0006355
Mepo3g00008 253 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 212 - -
Mepo3g00008 253 ProSiteProfiles NAC domain profile. 15 159 IPR003441 GO:0003677|GO:0006355
Mepo3g00008 253 MobiDBLite consensus disorder prediction 208 229 - -
Mepo3g00008 253 MobiDBLite consensus disorder prediction 208 253 - -
Mepo3g00008 253 Gene3D NAC domain 24 163 IPR036093 GO:0003677|GO:0006355
Mepo3g00008 253 Pfam No apical meristem (NAM) protein 16 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00008 Mepo-Chr3 183858 184878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00008 1 243 NAC Transcription Factor Family AT5G13180 57.540 4.81e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo3g00008 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00008 - - var:108321729 333.569