Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo31g00001 ATGCAAACGATAATGGATCCCACCAAAAAGCGCAAGCTGGAGGAGAACGGCTTCGGCGGCGAATCTGATCATCTAAAGCTCTCCCCCTCGGAAGGCCGCAAGCTGATCGAGCGTTTCACCCCCGACCAGCTAATCAACATCCTCCAAGACGCCGTCGTCCGCCATCCCGACGTTCTCTCCGCCGTTCGTGCAGTTGTAGACCCAGACATCTCCCGACGCAAGCTCTTCATCCGCGGCCTCGGTTGGGACACCACCACCGAGGGCCTCCGTTCACTCTTTTCAACCTACGGTGAACTCGAAGAAGCCATCGTCATCGTCGATAAGGCCACGGGGAAGTCAAAGGGTTACGGCTTTGTAACCTTCCTCCACGTGGACGGTGCCCTATTAGCTCTCCGTGAGCCTAGCAAGCGTATTGATGGGCGCGTTACTGTCACGCAGCTGGCTGCAGCAGGGAATTCAGGCTCCAACACCAACGCAGCTGACGTTGCCCAACGTAAAATATATGTATCCAATGTGCCGCCAGATCTTCCAGGGGACAAGCTTCTAGCCCACTTCTCAATTTATGGGGAGATCGAGGAAGGTCCATTGGGATTTGATAAGCAGACAGGAAGATCCAAAGGCTTCGCTCTTTTTGTTTATAAGACACCTGAGGGGGCAAACGCTGCCGTGTCAGAGCCCGTCAAGAATGTGGAGGGGCGCCAGTTAAATTGCAAGCTGGCAATAACAGATGGTGGGAAACAGCAAGGGATGCGGGGTGGCCCGGACGGGGCTCAGGGTCGTGGGAATGCTCATGGAAATGGATTGGGGATGGCTCCTGCAGCTGGGCCTGCGTCGGGTCAATATGGTGCTTCTGTGGGTATGGGTTCTTATGGTGGGTTTTCTGCTGGGCATCAGGGTCAGCCTCCAATGGGTAACCATCCTTTGAATTCGTCTGTTGGTGGTGGTTTGTCTTCTGTTGGGAATCAGGCTCCATCTTCAATGGGTGGAGCTGGTGGGTATGGTGGTGGTCATTATGGAGGTTATGGTGGGCCAGCGGCGACTGGCTATGGCGGTAGTGGTGGTGGCGGTTATGGCGGAGGTAGTGGTGTGACGGGTCCCAGTGCGGGAGCCGGTGGACATGGTTCTGCTGGAGGTAGTGGTGGACTTGGACTTGCTTCCTTGTACAGATTACCAAGTTCAGGTGGAATGCAAGCTGGTGGATATCCTGACAGTGGACACTATAATTCAGCCGGCTATCAGAATCAGCATCATCCTCCTGCTGGAGCGTCCCCGGTGCCAAGGGTTCAACCTGGTTCCATGTATCCAAATGTGCCTCCTTACTACTAA 1326 0.5498 MQTIMDPTKKRKLEENGFGGESDHLKLSPSEGRKLIERFTPDQLINILQDAVVRHPDVLSAVRAVVDPDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAITDGGKQQGMRGGPDGAQGRGNAHGNGLGMAPAAGPASGQYGASVGMGSYGGFSAGHQGQPPMGNHPLNSSVGGGLSSVGNQAPSSMGGAGGYGGGHYGGYGGPAATGYGGSGGGGYGGGSGVTGPSAGAGGHGSAGGSGGLGLASLYRLPSSGGMQAGGYPDSGHYNSAGYQNQHHPPAGASPVPRVQPGSMYPNVPPYY 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo31g00001 441 SMART rrm1_1 74 146 IPR000504 GO:0003723
Mepo31g00001 441 SMART rrm1_1 166 238 IPR000504 GO:0003723
Mepo31g00001 441 MobiDBLite consensus disorder prediction 244 264 - -
Mepo31g00001 441 Gene3D - 60 156 IPR012677 -
Mepo31g00001 441 SUPERFAMILY RNA-binding domain, RBD 156 266 IPR035979 GO:0003676
Mepo31g00001 441 SUPERFAMILY RNA-binding domain, RBD 66 148 IPR035979 GO:0003676
Mepo31g00001 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Mepo31g00001 441 PANTHER GEO13361P1-RELATED 56 364 - -
Mepo31g00001 441 Gene3D - 157 272 IPR012677 -
Mepo31g00001 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 174 IPR000504 GO:0003723
Mepo31g00001 441 MobiDBLite consensus disorder prediction 396 441 - -
Mepo31g00001 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Mepo31g00001 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 234 IPR000504 GO:0003723
Mepo31g00001 441 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Mepo31g00001 441 MobiDBLite consensus disorder prediction 1 25 - -
Mepo31g00001 441 MobiDBLite consensus disorder prediction 7 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo31g00001 161 250 C2H2 Transcription Factor Family AT2G19380 39.785 3.30e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo31g00001 K12741 - gmx:100794097 529.25