Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g05089 ATGGACTCAACCTCCTTTGATCTCCCTCCACCACCACAACCACAGCAACCCACCACCGTTCCCTTCACCCTCGAACAACCCAACTTCTTCACTCACCACGTGGCACCCCATCCTCCTTACGCTGAGATGATATACAAAGCAATTGAAGCACTGAAAGAGAAAGATGGATCAAGCAAAGGAGCAATAGGAAAGTACATAGAACATGTCTACAAACAAGTTCTTCCACCAGAACACACCACCTTGTTAACACAACATCTCAACCACTTGAAATCTGCTGGTCTTCTAATCATGTTCAAAAAATCATATAAATTACCTTCCTCACCCCCTCCACCTCCCACTCTCAATGGATTTGACCACTCTGAATCTCATCTTCCTTTCACTCCTTTAACCCAAAGAGGTCGTGGTCGTCCTCCGAAGCCCAAGCCCAACCCCATACCAAATGCCCAGCCCGTTTTCGTTTCTCTCGACCCTCCTCCTCCAACTGCTGTGGAGCCTGTGCTATCTGTTAAAAGAGGGCGTGGACGTCCGCCTGGGACTTTCAGATCTAAGTCTGTAAAGAGGCCCGGCCGTCCTCCGAAGCCCAAATCTGTGTCCAATGGCCTCAAACGACGCCCTGGCCGTCCACCTAAAACCCAGTCGCACCAAACACCTGTCATACCTTTTGCTGCTGCTCCTGTTCCTTTTCCTTCTGTTGTTCCAGATGAAGCCAATGCATCTGTTAGATCTACTAGGCCCAGAGGCCGCCCCAAGAAGCATGCAGATGCGGTGGTTCCAGGTGCGAAAAGGCGGGGTCGTCCTAAGAAGCTTGCCGTGGTGGGCAGGCCCAAAAATCCCTCCAGAAGGCCAATTGGCCGCCCAAAGGGAGCAAAAGGTAAAAAGTTTGTGGATGAAGATCTAAGAAGGAAGCTTGAACACTTTGTAAGTTGA 927 0.5016 MDSTSFDLPPPPQPQQPTTVPFTLEQPNFFTHHVAPHPPYAEMIYKAIEALKEKDGSSKGAIGKYIEHVYKQVLPPEHTTLLTQHLNHLKSAGLLIMFKKSYKLPSSPPPPPTLNGFDHSESHLPFTPLTQRGRGRPPKPKPNPIPNAQPVFVSLDPPPPTAVEPVLSVKRGRGRPPGTFRSKSVKRPGRPPKPKSVSNGLKRRPGRPPKTQSHQTPVIPFAAAPVPFPSVVPDEANASVRSTRPRGRPKKHADAVVPGAKRRGRPKKLAVVGRPKNPSRRPIGRPKGAKGKKFVDEDLRRKLEHFVS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g05089 308 SMART h15plus2 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05089 308 MobiDBLite consensus disorder prediction 105 296 - -
Mepo2g05089 308 MobiDBLite consensus disorder prediction 135 164 - -
Mepo2g05089 308 SUPERFAMILY "Winged helix" DNA-binding domain 35 111 IPR036390 -
Mepo2g05089 308 Gene3D - 33 113 IPR036388 -
Mepo2g05089 308 MobiDBLite consensus disorder prediction 1 21 - -
Mepo2g05089 308 CDD H15 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05089 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 36 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05089 308 PRINTS AT-hook-like domain signature 241 251 IPR017956 GO:0003677
Mepo2g05089 308 PRINTS AT-hook-like domain signature 168 179 IPR017956 GO:0003677
Mepo2g05089 308 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Mepo2g05089 308 FunFam Histone H1.2 33 114 - -
Mepo2g05089 308 Pfam linker histone H1 and H5 family 37 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05089 308 PANTHER HISTONE H1 12 212 - -
Mepo2g05089 308 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Mepo2g05089 308 SMART AT_hook_2 170 182 IPR017956 GO:0003677
Mepo2g05089 308 SMART AT_hook_2 243 255 IPR017956 GO:0003677
Mepo2g05089 308 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Mepo2g05089 308 SMART AT_hook_2 280 292 IPR017956 GO:0003677
Mepo2g05089 308 SMART AT_hook_2 185 197 IPR017956 GO:0003677
Mepo2g05089 308 SMART AT_hook_2 260 272 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g05089 Mepo-Chr2 58805597 58807112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g05089 5 109 Single Myb Histone (SMH) Gene Family AT1G49950 31.304 1.12e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g05089 - - psat:127100408 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g05089 2 58805597 58807112 Mepo2g05089 2 58805597 58807112 ECH