Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g05088 ATGGACTCAACCTCCTTTGATCTCACTCCACCACCTCCACCTCCACCCATCACTGTTCCCTTCACCCTCGAACAACCCAACTTCACTCACCACGTGGCACCCCATCCTCCTTACGCTGAGATGATATACAAAGCAATTGAAGCACTGAAAGAGAAAGATGGATCAAGCAAAAGAGCAATAGGAAAGTACATAGAACATGTCTACAAACAAGTTCTTCCACCAGAACACACCACCTTGTTAACACAACATCTCAACCACTTGAAATCTGCTGGTCTTCTAATCATGTTCAAAAAATCATACAAGCTACCTTCTTCACTCCCTCCACCTCCCACTCTCAATAGATCTGACCACTCTGAATCTCATCTTCCTTTCACTCCTTTAACCCAAAGAGGTCGTGGTCGTCCTCCGAAGCCCAAGCCCAACCCCATACCAAATGCCCAGCCCGTTTTCGTTTCTCTCGACCCTCCTCCTCCAACTGCTGTGGAGCCTGTGCTATCTGTTAAAAGAGGGCGTGGACGTCCGCCTGGGACTTTCAGATCTAAGTCTATAAAGAGGCCCGGCCGTCCTCTGAAGCCCAAATCTGTGTCCAATGGCCTCAAACGACGCCCTGGCCGTCCACCTAAAACCCAGTCGCACCAAACACCTGTCATACCTTTTGCTGCTGCTCCTGTTCCTTTTCCTTCTGTTGTTCCAGATGAAGCCAATGCATCTGTTAGATCTACTAGGCCCAGAGGCCGCCCCAAGAAGTATGCAGATACGGTGGTTCCAGGTGCTGGAGGAGCAGCGACAAGGCGGGGTCATCCTAAGAAGCTTGCCGTGGTGGGTAGGCCCAAAAATCTCTCCGGAAGGCCAATTGGCCGCCCAAAGGGAGCAAAAGGTAAAAAGTTTGTGGATGAAGATCTAAGAAGGAAGCTTGAACACTTTCAATCAAAGGTTAAGGAATCTCTTAACGTGCTTAAGCCTCTCTTTGATCATCAAAGTCCAGCCACTACAGTTGCAGCAATCCAAGAGTTAGAAATGCTGGCAACTTTGGACCTTAAAGCACCATTAAGAGATGAAACACTGCAGCCACAGCAATTTCCGGAACCACAACTGCTGCAACAAGAGCTGCCATCTCAGCAACTGCATCCCCAGCCAGTGCCACAGGCGCTGCCATCTCAGCAACTGCATCCCCAGCCAGTGCCATCTCAGCAACTCCATCCCCAACCAGTGCCACAGGCGCCGCCATCTCAGCAACTGCATCCCCAGCAAGTGCCATTGCAGCAATATCTCCAGATGCCATTGCAGCAACAGGTGCAGCAGCTGTTTCAACCACATACTTTAGCCCCAAGCTAG 1335 0.5034 MDSTSFDLTPPPPPPPITVPFTLEQPNFTHHVAPHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPEHTTLLTQHLNHLKSAGLLIMFKKSYKLPSSLPPPPTLNRSDHSESHLPFTPLTQRGRGRPPKPKPNPIPNAQPVFVSLDPPPPTAVEPVLSVKRGRGRPPGTFRSKSIKRPGRPLKPKSVSNGLKRRPGRPPKTQSHQTPVIPFAAAPVPFPSVVPDEANASVRSTRPRGRPKKYADTVVPGAGGAATRRGHPKKLAVVGRPKNLSGRPIGRPKGAKGKKFVDEDLRRKLEHFQSKVKESLNVLKPLFDHQSPATTVAAIQELEMLATLDLKAPLRDETLQPQQFPEPQLLQQELPSQQLHPQPVPQALPSQQLHPQPVPSQQLHPQPVPQAPPSQQLHPQQVPLQQYLQMPLQQQVQQLFQPHTLAPS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g05088 444 MobiDBLite consensus disorder prediction 105 215 - -
Mepo2g05088 444 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Mepo2g05088 444 SMART AT_hook_2 241 253 IPR017956 GO:0003677
Mepo2g05088 444 SMART AT_hook_2 282 294 IPR017956 GO:0003677
Mepo2g05088 444 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Mepo2g05088 444 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Mepo2g05088 444 MobiDBLite consensus disorder prediction 373 422 - -
Mepo2g05088 444 CDD H15 33 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05088 444 MobiDBLite consensus disorder prediction 373 395 - -
Mepo2g05088 444 Pfam linker histone H1 and H5 family 35 97 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05088 444 Gene3D - 31 110 IPR036388 -
Mepo2g05088 444 MobiDBLite consensus disorder prediction 396 412 - -
Mepo2g05088 444 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 34 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05088 444 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mepo2g05088 444 PRINTS Histone H5 signature 21 42 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mepo2g05088 444 PRINTS Histone H5 signature 48 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mepo2g05088 444 SMART h15plus2 32 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g05088 444 MobiDBLite consensus disorder prediction 133 162 - -
Mepo2g05088 444 MobiDBLite consensus disorder prediction 111 125 - -
Mepo2g05088 444 PRINTS AT-hook-like domain signature 166 177 IPR017956 GO:0003677
Mepo2g05088 444 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Mepo2g05088 444 PRINTS AT-hook-like domain signature 239 249 IPR017956 GO:0003677
Mepo2g05088 444 PANTHER HISTONE H1 16 249 - -
Mepo2g05088 444 FunFam Histone H1.2 31 112 - -
Mepo2g05088 444 SUPERFAMILY "Winged helix" DNA-binding domain 33 109 IPR036390 -
Mepo2g05088 444 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g05088 Mepo-Chr2 58792317 58794027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g05088 34 107 Single Myb Histone (SMH) Gene Family AT1G49950 39.189 3.28e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g05088 - - psat:127100408 459.144