Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g05050 ATGTCTTCTGTGACACAAGAAACAAAAACAAAAACAAAAACAGAACAACAACATGTGAAATGGAGAAAACCACCCAGAAACCAAATCAACAACAAAAACCTCAAACCCATTTCAGAAACAGATCCTAATACACAACAAATCCAATCCACACGCTCCAAGTCCACAATTTCATCTCTGCTTCTCTCTACACTCTCCAATGAAACAACAACCTCACAACAACCCATCAACAAAAAGATCAACTTTTCATCTGCAGCAGCTACTTTCAGAGGTTTAGGATGCACTGCTGGTGCTTCTCAACAGGTGTCGGTGCCGGCTGTGATTCGTGCTTCAGCAGATTGGCCTCATCAAGGGAAGAAAACCAGTAAAAAGAAGCACAAGAATAGTAATGATGGTTCTTCTTCTTCTTCAGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGATTTTCAGCAGATGCTGCTGCATCTGTTGATTGTGTTGTGTCTAAGAAGAATGTGTCTTCAAGAGCTAAAATTGATGTCGACAAGATAACTCACAGAGAGCCTTCATCTTCCTTCCGAAGGCGCACTGCTGTCTACCCAGAAACCTTCTCCTTTCCGGACACCGATCCTGACATTTTCACAGCTTGCTCTTTTGGAACTGCAACATACCCTCGTCATATCAGAGATCTTTCGTCTGATGATTTTTCTGAGATAATGGCGCTTCAAGGAAGAATACTAATGGGAGGACGATTCAACTCACGTGATCTTTACAGAGATTGGAGACTAGATGTTGATAACATGTCGTATGAGCAATTGCTTGAGCTCGGTGAGAGAATTGGTTATGTCAATACTGGACTTAAAGAAGATGAGATGGAACCTTACATAAGGAAGACTAAGCTTCAGTTTTCAGATGATGCATCAAAGCATCAAGTAGACAAAAAGTGCAGCATTTGCCAGGAGGAGTTTGAAGCAGATGATGAGCTTGGGAGGCTTAACTGTGATCACTTGTATCACTTTCAATGTATACAACAATGGGTAGCACACAAAAATTTCTGCCCTGTGTGTAAGCAGCAGGTTGCAGCTCGACACTGA 1086 0.418 MSSVTQETKTKTKTEQQHVKWRKPPRNQINNKNLKPISETDPNTQQIQSTRSKSTISSLLLSTLSNETTTSQQPINKKINFSSAAATFRGLGCTAGASQQVSVPAVIRASADWPHQGKKTSKKKHKNSNDGSSSSSATCVDFQDVWCGPGIGFSADAAASVDCVVSKKNVSSRAKIDVDKITHREPSSSFRRRTAVYPETFSFPDTDPDIFTACSFGTATYPRHIRDLSSDDFSEIMALQGRILMGGRFNSRDLYRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMEPYIRKTKLQFSDDASKHQVDKKCSICQEEFEADDELGRLNCDHLYHFQCIQQWVAHKNFCPVCKQQVAARH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g05050 361 MobiDBLite consensus disorder prediction 1 53 - -
Mepo2g05050 361 Pfam Ring finger domain 312 354 IPR001841 -
Mepo2g05050 361 MobiDBLite consensus disorder prediction 23 53 - -
Mepo2g05050 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 359 IPR013083 -
Mepo2g05050 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Mepo2g05050 361 FunFam E3 ubiquitin-protein ligase rnf12-A 280 359 - -
Mepo2g05050 361 SUPERFAMILY RING/U-box 312 358 - -
Mepo2g05050 361 SMART ring_2 313 353 IPR001841 -
Mepo2g05050 361 MobiDBLite consensus disorder prediction 112 137 - -
Mepo2g05050 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 23 357 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g05050 Mepo-Chr2 58444244 58447579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g05050 17 268 C3H Transcription Factor Family AT1G73760 41.877 3.25e-49 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g05050 - - cam:101510167 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo7g00599 7 9963777 9968361 Mepo2g05050 2 58444244 58447579 ECH
Mepo2g05050 2 58444244 58447579 Mepo2g05050 2 58444244 58447579 ECH