Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g05049 ATGGGGAGGAAGAAGAAGCGCGTTGCTTCAAAGGTTTGGTGTTATTACTGCGATCGTGAATTCGATGACGAGAAGATCTTGGTTCAGCATCAGAAAGCCAAACACTTTAAGTGTCATGTTTGTCATAAGAAGCTTTCCACTGCTGGTGGCATGTCCATTCACGTTCTTCAGGTCCACAAAGAAAACGTCACCAAGGTGCCCAATGCGAAACCTGGAAGAGAGAGTACAGAAATTGAAATATACGGAATGCAGGGGATTCCGCCAGATGTCTTGGCTGCTCATTATGGAGATGAAGACGATGATGTTCCATCAAAGACAGCCAAGGTGGACATCCCATCAACCCCATTTGCAGGTGGAATGGTGCCACCTCCTATGGGTACCGGATATCCTCCACGATCAACCATGGGCCCAATTCGACCAATATATAACCCTGCTGTACCAGGCCCTCCTAATGCTTGGGGAGTTGTTCCACCTCGACCTCAGCCATGGTTTCCCCAGCCTCCAACTGTTTCAATTCCTCCTCCGGTTCAATACCCACAGCAACCATTATTTCCTGTTCAGAATGTGAGGCCTCCATTGCCATCAACTACTTCACCTGCACTACAATCTCAGATTACTCCTCCTGGACTGTCTTCATCTACACCTCCTGTCCCAGTTTCACAGCCTTTGTTTCCTGTTGTTGGAAATAACCACATGGCCACTCAAAGTTCACCATTTTCCGCTGCACCCATGTCTTCAAGTGTACCATCAATAACTCCTGGGCTTTCTTCAAATGTTCCTATTGACACACATTTGGGCATCAACTCTTCTGTGACAAGTAGTTATCAAGCAATAGGGATTCCAGGTGGGATAGCAAGTAACTCACATTCTTATGCTTCTGGCCCAAATACCGGTGGTCCTTCAATTGGACCTCCACCAGTAATCTCAAACAAAGCTCCCGCTACTCAGCCTGCCACTAACGAAGTCTACTTAGTTTGGGATGACGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTAACAAAATATCAGGTTCATGATGAAAGTAGCCAGGTAAGTCATACTACCTTTTTATTACTTGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTATGCTTTCTGTTTTCAGATTCAGTTGTTTACACATATTAAAAGAGGTACATTCTGTATAAGTTTGCAATCATTTAAAAAATAA 1200 0.4458 MGRKKKRVASKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMSIHVLQVHKENVTKVPNAKPGRESTEIEIYGMQGIPPDVLAAHYGDEDDDVPSKTAKVDIPSTPFAGGMVPPPMGTGYPPRSTMGPIRPIYNPAVPGPPNAWGVVPPRPQPWFPQPPTVSIPPPVQYPQQPLFPVQNVRPPLPSTTSPALQSQITPPGLSSSTPPVPVSQPLFPVVGNNHMATQSSPFSAAPMSSSVPSITPGLSSNVPIDTHLGINSSVTSSYQAIGIPGGIASNSHSYASGPNTGGPSIGPPPVISNKAPATQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDESSQVSHTTFLLLGVAFTSNQMSRLYAFCFQIQLFTHIKRGTFCISLQSFKK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g05049 399 CDD SUF4-like 11 92 - -
Mepo2g05049 399 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Mepo2g05049 399 MobiDBLite consensus disorder prediction 193 210 - -
Mepo2g05049 399 SMART c2h2final6 12 35 IPR013087 -
Mepo2g05049 399 SMART c2h2final6 36 59 IPR013087 -
Mepo2g05049 399 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Mepo2g05049 399 Gene3D Classic Zinc Finger 2 66 - -
Mepo2g05049 399 MobiDBLite consensus disorder prediction 193 216 - -
Mepo2g05049 399 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Mepo2g05049 399 PANTHER ZINC FINGER PROTEIN 207 1 359 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g05049 1 392 C2H2 Transcription Factor Family AT1G30970 59.559 2.16e-144 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo2g05049 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g05049 - - tpra:123918401 697.582