Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g05046 ATGCTAGGTTCATTACCTATACTGCCTCTACCCGCTCCTCCCACTGATGGAAATCTTGGTCCTCTCCCTGAGGCTCAACTCACTCAAGAGGAGGTGGAGGAGAGGAATGAGAGATCCTCCATTGAGGAAGCAGCACCGACAACTGTTGCCACACACACTAGAACTATTGGAATAATTCATCCCCCTCCAGACATTAGAACCATTGTTGATAAAACCTCTCAGTTTGTTGCTAAAAATGGTCTTGAATTCGAAAAGCGGATTATTGCTAATAATGCAGGCAATGCCAAGTTTAATTTCCTCAATCCATCCGATCCCTATCATGCATATTATCAGCACCGGCTTTCTGAGTTTCGTAGTCAGAATCAATCTTCTACTCAACAACCTGGGGATTCTGCTCTATTGGAATCAGCTCCACCTGCGCCGGAAACTGATAGTAACGATGTAGCAACTACAGAGAAGCCTGATATCTCTGCCCAGTTTAAACCAGTAAGGAAAGTACTTGATCCTCCCGAGGCTGAGCAGTATACAGTTAGGCTTCCTGAAGGCATTACAGGGGAGGAGCTGGATATCATAAAGCTCACAGCACAATTTGTGGCTCGTAATGGGAAATCCTTTTTGACTGGATTGACAAGTAGGGAGATTAATAACCCCCAATTTCATTTCATGAAACCAACTCACAGCATGTTTACATTTTTCACTTCCCTTGCCGATGCATATTCAAAGGTTTTGATGCCTCCAAAGGGGTTGACAGAGAAGCTAAAAAAGAGTGTACCCGACATGGCTACCGTGCTTGAAAGATGTGTGAATAGGCTAGAATGGGAGCGTTCACAAGAGCAAGCTAGGCAAAAGGCTGAAGATGAGATAGAGCAAGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAGTCAATAGACTTTGCTGATGACGAGGATGAAGAATTACCTCCTCCAATGACCCTTGAGGAGGTTATAAGGAGAAGCAAGATGACACCCATGGAAGAAGATACCGTTGAGCCAGGGAAGGAAGTGGAAATGGATATGGATGAGGAAGAGGCCCAGCTTGTTAAAGAGGGAATGGAAGTGGGAATGGGAGCTGTTAGTTTGGAAGACAATGATGAAGGGAAGAAGAGTGAATTCAGGGTTACTGAAGACCCTGAACCACCGATTAGGATTGTGAAGAACTGGAAGAGACCAGAAGACAGGCTTCCTGCAGATAGAGATTCAACCAAGTTTGTGGTTTCTCCTATCACCGGTGAATTGATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCTAAGTACAAAGAACAGAAAGAAAGGATGTTTGCCAAAATTCGAGAAACCACTTTGGCACAGGATGATGAAATCTCAAAAAACATTGTTGGACTTGCTCGGACTCGTCCTGATATTTTTGGTACTACTGAGGAAGAGGTTTCTAATGCTGTTAAGGCTGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACAGCGGTAGTATTGGCCGTACTGCAAACCAAGCAATGTCACAAAATATTGGAAGTGAGGATCAAAATGATGCTTATAATAATGAATCTAAAAACCTCCCTGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTGCGTCCTCTTCCGCCACCACCTGGACTAGCTTTGAATCTACCTCGTGGTCCTATGCATAACATGCAGTATTCTAATCCTAATAGCATCGGCCTTTCAATGCCTCCACCAAGACCAGGCATGCACATGATGCAACCTCTCCGGCCAGCCCCTCCTCCTCCAATGCAGATGCCTGGTGGACAACATTCCATGATGGGTGGTCAACCACCCCCAATGCATCCATCAATTCCTATGAATAACCAAGGAATTCCCATTCCTCCACCACCGGGATCTCAGTTCACTCCCGTTCCTGTTCCACGACCTTATGCTCCTCACCCTCATCCATCATCAGGGATGATGCCTATGATGCATCCACCACCTCCGCCTCAAGGAGTGCCCCCACCGCCGCCACCTGAGGAAGCTCCTCCCCCGCTTCCAGAGGAACCAGAACCAAAGAGGCAGAAGCATGACGATTCTGCTCTGATCCCTGAGGATAAATTCCTGGCTCAGCATCCGGGACCTGCTCGGATCAGTATATCTGTTCCTAATGTTGATGAAGGAAACCTCAAAGGACAAGTTCTGGAAATAACTTTGCAATCTCTGTCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATGTCAGTGGAGGAGAAACACTCTCCCTAGCCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2439 0.458 MLGSLPILPLPAPPTDGNLGPLPEAQLTQEEVEERNERSSIEEAAPTTVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGLEFEKRIIANNAGNAKFNFLNPSDPYHAYYQHRLSEFRSQNQSSTQQPGDSALLESAPPAPETDSNDVATTEKPDISAQFKPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMATVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDTVEPGKEVEMDMDEEEAQLVKEGMEVGMGAVSLEDNDEGKKSEFRVTEDPEPPIRIVKNWKRPEDRLPADRDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAYNNESKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRGPMHNMQYSNPNSIGLSMPPPRPGMHMMQPLRPAPPPPMQMPGGQHSMMGGQPPPMHPSIPMNNQGIPIPPPPGSQFTPVPVPRPYAPHPHPSSGMMPMMHPPPPPQGVPPPPPPEEAPPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISISVPNVDEGNLKGQVLEITLQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVSGGETLSLALRERGGRKR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g05046 812 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 45 762 IPR045146 GO:0003723|GO:0045292
Mepo2g05046 812 FunFam Probable splicing factor 3A subunit 1 701 811 - -
Mepo2g05046 812 Coils Coil 274 294 - -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 636 716 - -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 118 132 - -
Mepo2g05046 812 ProSiteProfiles SURP motif repeat profile. 68 110 IPR000061 GO:0003723|GO:0006396
Mepo2g05046 812 Pfam Ubiquitin family 741 807 IPR000626 GO:0005515
Mepo2g05046 812 SUPERFAMILY Ubiquitin-like 707 810 IPR029071 -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 529 576 - -
Mepo2g05046 812 Pfam Surp module 66 117 IPR000061 GO:0003723|GO:0006396
Mepo2g05046 812 Pfam Surp module 188 239 IPR000061 GO:0003723|GO:0006396
Mepo2g05046 812 Gene3D - 701 811 - -
Mepo2g05046 812 SMART ubq_7 733 805 IPR000626 GO:0005515
Mepo2g05046 812 SUPERFAMILY Surp module (SWAP domain) 167 240 IPR035967 GO:0003723|GO:0006396
Mepo2g05046 812 PRINTS Proline rich extensin signature 549 565 - -
Mepo2g05046 812 PRINTS Proline rich extensin signature 677 702 - -
Mepo2g05046 812 PRINTS Proline rich extensin signature 642 658 - -
Mepo2g05046 812 PRINTS Proline rich extensin signature 607 628 - -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 118 155 - -
Mepo2g05046 812 FunFam Splicing factor 3a, subunit 1 183 241 - -
Mepo2g05046 812 ProSiteProfiles Ubiquitin domain profile. 753 809 IPR000626 GO:0005515
Mepo2g05046 812 MobiDBLite consensus disorder prediction 1 23 - -
Mepo2g05046 812 FunFam Splicing factor 3A subunit 1 52 123 - -
Mepo2g05046 812 Gene3D Surp module 183 241 IPR035967 GO:0003723|GO:0006396
Mepo2g05046 812 SUPERFAMILY Surp module (SWAP domain) 44 118 IPR035967 GO:0003723|GO:0006396
Mepo2g05046 812 Gene3D Surp module 52 125 IPR035967 GO:0003723|GO:0006396
Mepo2g05046 812 Pfam Pre-mRNA splicing factor PRP21 like protein 259 475 IPR022030 -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 636 695 - -
Mepo2g05046 812 ProSiteProfiles SURP motif repeat profile. 190 232 IPR000061 GO:0003723|GO:0006396
Mepo2g05046 812 SMART surpneu2 188 241 IPR000061 GO:0003723|GO:0006396
Mepo2g05046 812 SMART surpneu2 66 119 IPR000061 GO:0003723|GO:0006396
Mepo2g05046 812 CDD Ubl_SF3a120 725 805 IPR035563 -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 696 715 - -
Mepo2g05046 812 MobiDBLite consensus disorder prediction 545 571 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g05046 740 809 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 35.714 9.24e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g05046 K12825 - gmx:100797261 1192.95