LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g04990	ATGAAAGCCTTTGTGTTGAAAAAAAGACGCGAACTCATTGAAATTGTATCAGAGGTTGATGATAAACTTTCTGAAGCTCTTCGTGGTGGCAGCCAAATTCCAGAGTCTTATCTCGATGATGCAATTCATAGGGCAACTATAGCAAGGAAATTTGTGCCAATTATCATCAGTGATGAGAGATATGAAGGGTTACAACTATTTAAGGAGGGTGTAATTAGGTATTTGCCAAGTCCAATCGATGTTAGTAATTATGCTCTTGATCAAAATAGGAAAGGTGAGAAAATTGAATTGTCTGGAAGTATTGATGCACCATTTGTTGCAAAGGCTTTCGCAAATTGGCATAGGACGTATTTAAAATTAACTTATCTAAGAATCTATCAGGGTGTTATTAAGAAGGGTGATTTTATTACAAATGTTAACACTGGTGAGAAGATTCTGATTCCTCGTTTGGGTAAGAGACATGACGATCTGATTGAGGATCTTGATGAAGCTCATGCTGGAGAAATTGTTTTTGTGTTTGATGCTCATCTTGAATCTGGAGATACTTTTACCGATGGGTCTGTTAGATATACAATGACTTCTGCCGATGTTCCTGCTTATTCGGTCTCAAAAGATTCTGGAGAGAAATTTTCAAATGGTAAAAGAGAGGCACCACCTTGTGAGAAGCCAGAACCTGTTAGGATCCATCTTCGTAACATGATCATTGTACCTGAGATGATTGGGAGCATTATTGGAGTGTATAATGGGAAGACCTTTAACCAGGTTGAAATCAAACCTGAGATGATTGGTCATTACCTTGCCGAATTCTCGATTTCATACAAGCCTGTTAAGAATGGTAGACCTGGTATTGGTACTACTTACTCCTCCAGGTTCATTGCTCTCAAGTGA	888	0.384	MKAFVLKKRRELIEIVSEVDDKLSEALRGGSQIPESYLDDAIHRATIARKFVPIIISDERYEGLQLFKEGVIRYLPSPIDVSNYALDQNRKGEKIELSGSIDAPFVAKAFANWHRTYLKLTYLRIYQGVIKKGDFITNVNTGEKILIPRLGKRHDDLIEDLDEAHAGEIVFVFDAHLESGDTFTDGSVRYTMTSADVPAYSVSKDSGEKFSNGKREAPPCEKPEPVRIHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKNGRPGIGTTYSSRFIALK	295

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g04990	295	Gene3D	Translation factors	84	198	-	-
	Mepo2g04990	295	Gene3D	-	1	82	IPR027417	-
	Mepo2g04990	295	SUPERFAMILY	Ribosomal protein S19	213	279	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Mepo2g04990	295	Hamap	30S ribosomal protein S19 [rpsS].	122	284	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Mepo2g04990	295	PANTHER	ELONGATION FACTOR G, MITOCHONDRIAL	1	212	-	-
	Mepo2g04990	295	Gene3D	30s Ribosomal Protein S19; Chain A	200	282	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Mepo2g04990	295	FunFam	Elongation factor G, mitochondrial	87	200	-	-
	Mepo2g04990	295	SUPERFAMILY	Translation proteins	62	191	IPR009000	-
	Mepo2g04990	295	PRINTS	Ribosomal protein S19 family signature	260	275	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Mepo2g04990	295	PRINTS	Ribosomal protein S19 family signature	248	260	IPR002222	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g04990	Mepo-Chr2	57966605	57968686	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g04990	208	295	Cytoplasmic Ribosomal Protein Gene Family	AT5G09510	85.227	2.74e-49	158

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g04990	K02355		-	mtr:11414489	365.925

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