Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04936 ATGATTACAGTCATGAAAGGTGATGCAGATGCAGGTGCCTTGGGAGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTCCTTTGTCATGGTTGTGACAATTTGGTTCACTCTGCTAATCTATTAGCAAGTAGACACGAAAGGGTTCGCCTTCAAACCGCGTCTGCTAAGGTAACAACAACAGCACAAGCATGGCACAGTGGATTCACAAGGAAAGCAAGAACGCCCCGCCACAACAAAAATTCGTCGATTCAACAACAACAGCAACGTCTCAAGGAAAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAACTCGGAGGTGAAGAAGAACAAGGACAAGAACTACTTGTTGATATTGATGAGGCTGATGAGGAGCAGTTGCTGTGTCGTGTGCCAGTTTTTGATGCCAACCCTTTTGATTTAGAGACTTGTACTGTGAAAAATGATGTTGTTGATTTTGAGGAAATGTGTGACTTGGATAGTTTCTGTGAGTTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGTTTACTTGGTGTTGGGAGTAGTGAGATTCAAGAGAATTCATCAGGACAAGTGTTTGATTATAAACAAGAGAATGAAATGGATGCATCCAAAAATGAAATGTTAAAGGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGACATGACAAGTGATGAGGTTTTTCATTGGAATATTGATAATAATGATGTATCACTAGCACAACAAGAGAAAGAGTTTATGCCTTTGAGTAATAGTAGTGTTGGTTATAGTGAGAGTGTTATTACTAAAGAAGAAACAAAGAGAGAGAGATTTTTGAGACTAAATTATGAAGAGGTCATTACTGAATGGAGCAGGCAAGGTTCTCCTTCTCCATGGACTACTGCAAACCCTCCTAAGTTCAATTGCGATGATGATTCATGGCAAAACTTATTGGGTTCAAGTGGTGTAGATGGAGAAGTAAGAAGCTTAAGGGGGCAATTAATGGGAAGTGGTGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGGACAGCATGTTTTGCTGGAGGACCTACTTCCTTTCCAACTAATTACCACTGA 1251 0.3941 MITVMKGDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANLLASRHERVRLQTASAKVTTTAQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEQGQELLVDIDEADEEQLLCRVPVFDANPFDLETCTVKNDVVDFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSSEIQENSSGQVFDYKQENEMDASKNEMLKVKDEELDDLESVFDMTSDEVFHWNIDNNDVSLAQQEKEFMPLSNSSVGYSESVITKEETKRERFLRLNYEEVITEWSRQGSPSPWTTANPPKFNCDDDSWQNLLGSSGVDGEVRSLRGQLMGSGGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTACFAGGPTSFPTNYH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04936 416 CDD Bbox1_BBX-like 21 64 - -
Mepo2g04936 416 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
Mepo2g04936 416 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Mepo2g04936 416 SMART bboxneu5 17 64 IPR000315 GO:0008270
Mepo2g04936 416 Pfam CCT motif 358 400 IPR010402 GO:0005515
Mepo2g04936 416 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Mepo2g04936 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04936 Mepo-Chr2 57488079 57490087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04936 11 400 C2C2-CO-like Transcription Factor Family AT1G25440 42.857 2.56e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mepo2g04936 zf-B_box 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04936 - - adu:107478728 416.001