Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04886 ATGAACACCACCGTAACTGTCACAACACGAGCTCAAATCCTCCGTTACACCACCGCATTCATCACCGGCTTTATTCATCAATCACAACTCCGTCGCCACCTCATTGAAACTCTCCACCGAGAAACTCCAATCACCAACCAAGTAACCTTAAAACAAATCAACCTCGCTTCAGAAGCTCTCGAAAGCGCCATTTCCAACTCCAGCTCCGCCATTCGTTCTTCCTCTCTCTCCCTCGCCGAGAAGCTTCTCCTTCCTCTCCCTGAGTATCCTCTCTCCTCCTTCCTCCTCTCCCTCATTCAAACCCTCCGTAACCGCGCCGAAGAATCTGCCATCGTTCTCCTCAGAATCTTTCATTCCAATCCTTCACTCGCTCGATCTGAAATAGCACCGTCTCTCTACGAGCATCTTTTTTGTTTTCATCTCTTCCCTGTTTTCCGATGGTTCGATGAACAGAGAACACGGATTTTTCCATTGGCTTCTGTAACCCCGAGCCGCGACGGTGACTACTCTGTTTCCGACGATTTGGTTATGCCTTATGCAAAGTTGTTATCGAGTGTGAGCAGTGATCAAGCGTTAAAGCTGAAGGAGTTGGAAAGGGAGTACGAAGAGGTTTTGGATGAGAATTGTAGGGTTCTTGCTGTGTATTTTAAAGAGGTTTTGGTAAATAAAGATGAAGATGCGACGATTAGTCCACCGTTGTTGATAATGAAGAACGCTGCAGGAGGTGGCAGCGACGACATTGGTGGATTGCATAGAAAGGAGGAAATTCAAATGCCTCAGTTGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACATCTATTGAATTTTTGAGCAGCAGTTCGAGCAGTATATCCTCCCTCGCACTATTATATCCTCAAAGAGTCTCTCCGAGAGTCCTCCATCCCCCAAAATCTTCAAAATATTGGACAACACCAGCCTATTTAAACTCAGCCCCTGAAACTCAATTTTCTTTAGATGAGAATTTACATTTTTCTTCTTCAGATTCTGAAGCTGTAAATGAGGAAAAAGACAAAAATGTGGCATTGTTGGAGCCTCAACAAAGCCAAAGCCAAAACAAGGAACAAATTCAAACCATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCAATGGCAGACTATGAAAACACGCCGCCACATGGAAGTGGGAAACAAACACCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATTGAGGAATGGTTTAATAGAGAGAACATAACTTGTCCTATCACTCGCCAGAAGCTGCAAAACACCAAGCTACCAAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAACCCCAGTTCAGTCCCGCCTACATGTGAAAGTCCATACAAAGATAGCGAGTCAGTAGTGAAGACAGAAATGCCTTCAGCTTCTCCTAATAGTGTCATAACTCAGGCCACTGTTGATGGGATGATTGGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATAGAGAAGTTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCACAGCATGCTATCAAAACCTCCAATTATTAATGGGTTTGTGGAGATACTTTTCAATTCCGTTGAACCCCAGGTGCTTCAGGCAGCAGTTTTCCTTCTGGCTGAGATGGGATCTAGAGACAATGCTGTTATTCAGACTCTAACACGTGTGGATACTGACATTGAATGTATAATGGCTCTTTTCGAGAAAGGATTGACAGAGGCTGTTGTGCTATTGTATGTTCTAAGCCCTTCCATTGTGACTCTTACTGAGATGGCCGTAGTGGAGTCCCTCATAGCAGTTTTCAATAAGAAAGAGCAAGACTTGGTTAGCATGTGTTTAAATCCCAAAACAGCCGCAGTTCTTCTACTGGGACAGATTATTGGAAGCAGTGATGAGATAATTGCATCTTCGGTTGTCAAGACTCTATTCTCAGAAAAAGCACTTGGAGCTATTGTTGGCAGTTTAGGAGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAAGATGGGACTTGTAGGAACACCATTGCTGACAAAGCAGAGCTCTCTTCTATTATGGAAAGCTTCATCCGTGCAAATGATGCAGAACGTTTCAAGATTGTTGAATTTTTTTCTGAGTTGATCAAGCTCAATAGGAGAACATTCAATGAAAGAATCCTCCATATTATAAAGGAAGAAGGGCCTTTTAGTACAATGCATACTCTTCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTCATGACTGGTCTCTTACTCCAACTTGATCTTCTGGTTGAACCAAGAAATATGAGCATATACCGTGAAGAGGCAATAGACAGTCTCATTTCATGCCTGAGGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTGATACAATTATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGGGCCGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTGCAGAAGAAGAGAGAGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATACTTTTTGAAGCTTTGGCAGATGGCATGAAGAGTAGAATTCCAGAGCTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCATATACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCCATTCGTAAATAAATTAAATTCTGCTAAGGATATAGAACAGAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCTTGCGTGATCTAACTGCTTCCTACGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTGGTTGATGAGAATGAGCCTAAAACAGATATTTGGAGACATAAAGAGCTAATCCAAGTAGATTGCAGAGGGAATGGAGATGTGCTGTCTGTCATTTGCTTCAAGGATAAAATCATTTCAGGCCATACAGATGGCAGCATCAAGGTCTGGACGTTAAAGGATAATGTATTACTTCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGACGATTTCAGAATCTGGTGACAGACTTTACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTCTATTGGAAAGACAGCAATACATTGTGAGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCACAACTTGTTTCATTCCTCAGGGGGCTGGTGTCAAGGTTCAGTCAATGAATGGAGAATCCAAGTTGTTAAATTCAAATAAATATGTGAAGTGCTTGGCTCATGCTCATGGAAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAATCAGTAATATTCAAAGTGGTTCTAAAAGATTACTTGGGAAAGCTTATCCTATTCATGCACTGCAAGTTCATGGTGAACTTATATATGCTGCTGGGTCTTCCTTGGATGGAACTGCTATAAAGATATGGAACAATTCCAATTACAGCATGGTTGGATCACTGCAAACTGGATCAGAAGTGCGGGCTATGGCAGTGAGTTCAGACTTAATTTATTTGGGGTGCAAGGGAGGTGTTGTAGAAATTTGGGATAAGAAACACATTAAAGTTGGCACGTTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGGCTCTAGACAGCAATGAACAAATTTTGGTGATTGGAACTTCAGATGGACAAATTCAGGCTTGGGAAATGAATTAA 4014 0.4248 MNTTVTVTTRAQILRYTTAFITGFIHQSQLRRHLIETLHRETPITNQVTLKQINLASEALESAISNSSSAIRSSSLSLAEKLLLPLPEYPLSSFLLSLIQTLRNRAEESAIVLLRIFHSNPSLARSEIAPSLYEHLFCFHLFPVFRWFDEQRTRIFPLASVTPSRDGDYSVSDDLVMPYAKLLSSVSSDQALKLKELEREYEEVLDENCRVLAVYFKEVLVNKDEDATISPPLLIMKNAAGGGSDDIGGLHRKEEIQMPQLENGRYNPMWSERDTSIEFLSSSSSSISSLALLYPQRVSPRVLHPPKSSKYWTTPAYLNSAPETQFSLDENLHFSSSDSEAVNEEKDKNVALLEPQQSQSQNKEQIQTIFKESRGSPDYPMADYENTPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRENITCPITRQKLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCESPYKDSESVVKTEMPSASPNSVITQATVDGMIGELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDIECIMALFEKGLTEAVVLLYVLSPSIVTLTEMAVVESLIAVFNKKEQDLVSMCLNPKTAAVLLLGQIIGSSDEIIASSVVKTLFSEKALGAIVGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSSIMESFIRANDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMTGLLLQLDLLVEPRNMSIYREEAIDSLISCLRNSDFPTTQLAAADTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITAEEERAADDWERKIASVLVSHEFGILFEALADGMKSRIPELRSACFISATWLIYMLTILPDTGIQGAARVCLLKPFVNKLNSAKDIEQRILSMLALNSFLHFSDGLRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDENEPKTDIWRHKELIQVDCRGNGDVLSVICFKDKIISGHTDGSIKVWTLKDNVLLLLQEIQEHTKAVTNLTISESGDRLYSGSLDRTAKIWSIGKTAIHCEQVHDMKDQIHNLVVTNSTTCFIPQGAGVKVQSMNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLATGTISNIQSGSKRLLGKAYPIHALQVHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGSEVRAMAVSSDLIYLGCKGGVVEIWDKKHIKVGTLQLGTNCKVNCMALDSNEQILVIGTSDGQIQAWEMN 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04886 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 473 IPR013083 -
Mepo2g04886 1337 Pfam WD domain, G-beta repeat 1093 1127 IPR001680 GO:0005515
Mepo2g04886 1337 SUPERFAMILY ARM repeat 526 1040 IPR016024 -
Mepo2g04886 1337 Gene3D - 1160 1337 IPR015943 GO:0005515
Mepo2g04886 1337 Pfam U-box domain 398 468 IPR003613 GO:0004842|GO:0016567
Mepo2g04886 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1303 1337 - -
Mepo2g04886 1337 SMART WD40_4 1046 1083 IPR001680 GO:0005515
Mepo2g04886 1337 SMART WD40_4 1257 1293 IPR001680 GO:0005515
Mepo2g04886 1337 SMART WD40_4 1295 1335 IPR001680 GO:0005515
Mepo2g04886 1337 SMART WD40_4 1088 1127 IPR001680 GO:0005515
Mepo2g04886 1337 SMART WD40_4 1218 1254 IPR001680 GO:0005515
Mepo2g04886 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1095 1128 IPR001680 GO:0005515
Mepo2g04886 1337 MobiDBLite consensus disorder prediction 373 400 - -
Mepo2g04886 1337 Coils Coil 187 207 - -
Mepo2g04886 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1095 1128 - -
Mepo2g04886 1337 CDD RING-Ubox_PUB 398 450 IPR045210 -
Mepo2g04886 1337 SMART Ubox_2 400 464 IPR003613 GO:0004842|GO:0016567
Mepo2g04886 1337 Gene3D - 1031 1158 IPR015943 GO:0005515
Mepo2g04886 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1303 1337 IPR001680 GO:0005515
Mepo2g04886 1337 SUPERFAMILY RING/U-box 392 471 - -
Mepo2g04886 1337 ProSiteProfiles U-box domain profile. 396 471 IPR003613 GO:0004842|GO:0016567
Mepo2g04886 1337 ProSitePatterns Trp-Asp (WD) repeats signature. 1322 1336 IPR019775 -
Mepo2g04886 1337 Gene3D - 535 874 IPR011989 -
Mepo2g04886 1337 SUPERFAMILY WD40 repeat-like 1067 1336 IPR036322 GO:0005515
Mepo2g04886 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04886 Mepo-Chr2 57055868 57069126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04886 381 468 U-box Gene Family AT1G23030 44.944 6.38e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04886 - - gmx:100808867 1917.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04886 2 57055868 57069126 Mepo2g04886 2 57055868 57069126 ECH