Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04824 ATGATGTTAGGGGAACCACCTCATCGTACAAATCCAACCGTACACGTTCCACCATGGCCATCGATGAACAATCCCACGGCGGAGATTTTTTCACCTTTAACCTCCTCAAAAGACGATTATTCTCAGTTCTACATGCAAGAAGCACTAAGCGCTTTTCAACACTATGTTAACGAAAACGACGACTACGATTCCGACTCGGAGATTTTGCCGAGTCATGAATCGGTGGATTCGTATTCTAACGATCATTTCCGCATGTTCGAGTTCAAGATTCGACGGTGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCTTTTTCTCATCCCGGCGAGAAAGCTCGCCGCCGTGACCCGAGAAAGTATAACTACTCTGGCACTTCGTGTCCTGATTTTCGTAAAGGAAGTTGCAAGAAAGGTGATTCGTGTGAGTTTGCGCATGGTGTTTTCGAGTGCTGGCTTCATCCTTCGCGTTACCGTACTCAGCCGTGTAAAGACGGAACCAGTTGTCGCCGGCCAGTTTGTTTTTTCGCTCACACCACGGAGCAACTTAGGGCTCCGACTCAACAGAGTCCCCGGAGTGTGCACTGCGTTGATTCGTATGACGGTTCTCCTCTCAGGCTTGCTATTGAGTCTTCCTGTGTGAAAACTCTTCCGTTCATGTCTCCTCCTGGATCGGTTTCTCCGGTGGAGTCTCCTCCCATGTCTCCGATTACTCCGATGACTCGGTCCTTGGGAAGATCTGTAGGTTCCAGCTCTGTAAATGAAATGGTGGCTTCTCTGAGAAACTTACAACTTGGTACCATGAAGTCATTACCTTCTTCATGGAATGTTCAAATGGGTTCTCCTAGATTCGGTTCTCCGAGAGGACCCGTGATCCGACCCGGATTCTGTAGCCTACCATCGACACCTACACAGGTCCCAAGTCGTGGTAGGGTTAATCATTTTGATCTTTGGGATCAGTGTTGTGAAGAAGAGCCTGTGATGGAGAGAGTGGAATCTGGAAGAGATATAAGGGTGAAGATGTTTGAGAAACTGAGTAAAGAGAACTCTTTTGATGGATCGGGTTCGGGTGAGGTGGTTGAGGATCCGGATGTTGGGTGGGTTTCGGAGCTGGTGAGCCCTTTCTTGGGTGATTGA 1137 0.4899 MMLGEPPHRTNPTVHVPPWPSMNNPTAEIFSPLTSSKDDYSQFYMQEALSAFQHYVNENDDYDSDSEILPSHESVDSYSNDHFRMFEFKIRRCARGRSHDWTECPFSHPGEKARRRDPRKYNYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPSRYRTQPCKDGTSCRRPVCFFAHTTEQLRAPTQQSPRSVHCVDSYDGSPLRLAIESSCVKTLPFMSPPGSVSPVESPPMSPITPMTRSLGRSVGSSSVNEMVASLRNLQLGTMKSLPSSWNVQMGSPRFGSPRGPVIRPGFCSLPSTPTQVPSRGRVNHFDLWDQCCEEEPVMERVESGRDIRVKMFEKLSKENSFDGSGSGEVVEDPDVGWVSELVSPFLGD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04824 378 SUPERFAMILY CCCH zinc finger 121 151 IPR036855 GO:0046872
Mepo2g04824 378 MobiDBLite consensus disorder prediction 1 20 - -
Mepo2g04824 378 Gene3D - 123 186 - -
Mepo2g04824 378 FunFam Zinc finger CCCH domain-containing protein 66 80 148 - -
Mepo2g04824 378 PANTHER UNKEMPT FAMILY MEMBER 46 372 IPR045234 -
Mepo2g04824 378 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Mepo2g04824 378 SMART c3hfinal6 157 180 IPR000571 GO:0046872
Mepo2g04824 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 147 IPR000571 GO:0046872
Mepo2g04824 378 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04824 Mepo-Chr2 56525708 56527513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04824 78 184 C2H2 Transcription Factor Family AT5G12850 71.963 5.37e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo2g04824 zf-CCCH 3.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04824 - - aprc:113867365 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04824 2 56525708 56527513 Mepo2g04824 2 56525708 56527513 ECH