Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04789 ATGACCACCACGCAGGAAGAAGGTCCCTCCGCCGTAGCTCCCGAAGGAGAAGACAAGAATGACGGTGGCGTAAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTACCTGCTACCCATGTCGTTTACTTCCCTCAAGGCCACTCCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTCCAAGTACCAAACTATTCCAATCTTCCCTCCAAGTTGCCTTGTACTCTTCACAGTCTCACCTTACATGCAGATCCAGACACAGACGAAGTATATGCCCGGATGACACTTCAGCCAGTGTCTTCTTTTGACATGGATGCTATATTAAGATCAGATATTTCTCTCAAGTCGAACAAGCCACAACCTGAGTTTTTCTGCAAGCAACTGACAGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCCCCTCTTGATTTCTCAGCACAACCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGCAATGTTTGGAAGTTCCGCCATATATACCGTGGACAACCGAAACGCCACTTGCTAACAACCGGATGGAGTCTTTTTATCAGTGGAAAGAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAACAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGACAACCGACTAATTTATCTTCCTCAGTACTGTCAAGTGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCATGCTAGTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAATTTGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCACCAAATATCACCTGGCATGCGCTTTAGAATGATGTTTGAAACAGAAGACTCGGGAACAAGAAGATATATGGGTACAGTTATTGGTGTTAGTGATCTGGATTCCGTGAGATGGAAAAACTCGCAATGGCGTAATTTGCAGGTTGGTTGGGATGAAGCCACCGCTGGAGAAAGGCGAAGTAGGGTCTCAATCTGGGAAATCGAACCTGTTACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTCAGATCCAAGAGACCAAGACAACCCGGAATGCCTGACGACGAGTCATTTGATTTTAGTAACCTTTTCAAGAATACAATGCCTTGGCTTGGTGATGATATGTGTATGAAGGATCCCCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAACATACAGCAAAATCCTGCTATGGCTAGCTCATTGCAACCAAATCATGTGCCTTCAATGCCTGCATCTGTTGTACAAAATCTTCCTGGATCCGATATTGCCCATCAATTGGGATTTTCCACTCAACAAATCTCTCAATCAAACAATGTAGCGTTCAATGCTCCGGGGATACCTCAGATGCTACCATCCACTTCTAGTGGAATGGGAGCAGTCGTGCAGTCAGAACAACAACATTCTAGACAGAATTTAGCATATCAAACTCTACCACAGAGTCAAGTTCAGACCCAACTTCTTAACCCCCAGAGTATTGTCCAAACGAACAATATTCTTCAATCACAACAACCGTCCATTCAAAACCATCAACTCCATAGAAGTCTCTCTCAGAACCCACTGCAACAGTTTCAACAGACTATAATTGGGCAGAACCAACCGCAAAATATGATTAGGCCCACTATGCCAGATCATATTAATCAACAGTTACATATGTCTGATAATCAGGTTCGGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAGCAGACACTCTTGTCTCAGCAATCTGCTCAGATTATTCAAAACCATGACCAGCAGAGGCAAGAATTAGATGTCACACACAACTCTAGGGCAATGGCTCCCCGTCAAGTGTTTGAAATTCCTCATACGCTTCAAAACTCACTGCTCGAGGCTAATTCTATGAACCATCAGATGACAGATCACAGTAGCCAGAACAATGTTCAGTTCTCCCATCCAGCCAAGCAACAAAAGCTTCAACATCAACAACAGCAAACACAACCCGGCTCACTGTCTAAAATGTCTAGTCATGTCGGACTTCCTTCTGCAACTACACCTAATCAGTTATCTGCTTCCGGTTGCAGTATACGGACCGTAGCAACTGGGACAGTGCCATCTGTAAGTACTGATGATGCTCCATCTTGTTCCACTTCACCTTCCACAAATAACCGTGTTGGCGCGCTTCCTCCAGTGACAACATCCCAGATCCTTATGGGCACAATAGGGGATGACGTGGCTCAGTCTGCTGTGACCATCTTGAGTCAAAATTCTAATGCAAATGTGGTAAAATATGCACCGCCAAATTATGAAGTTAAGCCTAGTTTAAACATTTCCGAAAATCACAACCCAGTGAATTTTTACCCTCAGACTTGCTTGAATGGTGGTGCTATCCAGACAGATTGTTTGGATACGTCGTCTTCTACAACTTCAGTTTGCCTTTCTCAGAGCGATTCACGCTTTCATCAGAATGACAAACCGTTATCTTACTATCCTCAGTCGATGTTTTGTAGAGACAACATTCAAAACGTGGAAGTTCAGGCTGATGCTAGGTGCAATGTTGCATATGGCAACAGCATGAATGGGCAAATGAGAATGCCACTGAATCTAGACTCTACGGTAACCAAAGGCACAACAAGGCTGGGCAAGGATTTGTCAAATGATTTCTCTTCGGGAGGCTTGCTTGGGGGCTATGAAAATAACGGTGATGCTCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATGGGGAGTCCCTGATATGACCTTTAATTCGATTGATTCCACTATAAATGATAGTGGTTTCTTGGATAGTGGTCCATGGGCTCCGCCGCCGCCGCCACCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATTGACATAACAAGATATTCAGGCTACGATGAGCTTAAACATGATCTGGCTCGTAGGTTTGGTATTGAGGGACAACTAGAGGATAGACAACGAGTAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCTTAGATGGAGATTTTGGCAATGGTGGCCTTCCAAGACAGGCCAGTAGCAGCTCTGATGGTGGGATTGCTTAA 3270 0.4459 MTTTQEEGPSAVAPEGEDKNDGGVNSELWQACAGPLVNLPLPATHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCTLHSLTLHADPDTDEVYARMTLQPVSSFDMDAILRSDISLKSNKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDEATAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDESFDFSNLFKNTMPWLGDDMCMKDPQAFPGMSLAQWMNIQQNPAMASSLQPNHVPSMPASVVQNLPGSDIAHQLGFSTQQISQSNNVAFNAPGIPQMLPSTSSGMGAVVQSEQQHSRQNLAYQTLPQSQVQTQLLNPQSIVQTNNILQSQQPSIQNHQLHRSLSQNPLQQFQQTIIGQNQPQNMIRPTMPDHINQQLHMSDNQVRLQLLQKLQQQQQTLLSQQSAQIIQNHDQQRQELDVTHNSRAMAPRQVFEIPHTLQNSLLEANSMNHQMTDHSSQNNVQFSHPAKQQKLQHQQQQTQPGSLSKMSSHVGLPSATTPNQLSASGCSIRTVATGTVPSVSTDDAPSCSTSPSTNNRVGALPPVTTSQILMGTIGDDVAQSAVTILSQNSNANVVKYAPPNYEVKPSLNISENHNPVNFYPQTCLNGGAIQTDCLDTSSSTTSVCLSQSDSRFHQNDKPLSYYPQSMFCRDNIQNVEVQADARCNVAYGNSMNGQMRMPLNLDSTVTKGTTRLGKDLSNDFSSGGLLGGYENNGDAQPELSSSMVSQTWGVPDMTFNSIDSTINDSGFLDSGPWAPPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYDELKHDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPRQASSSSDGGIA 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04789 1089 ProSiteProfiles PB1 domain profile. 977 1061 IPR000270 GO:0005515
Mepo2g04789 1089 MobiDBLite consensus disorder prediction 660 713 - -
Mepo2g04789 1089 Gene3D - 972 1066 - -
Mepo2g04789 1089 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo2g04789 1089 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Mepo2g04789 1089 CDD B3_DNA 130 222 IPR003340 GO:0003677
Mepo2g04789 1089 FunFam Auxin response factor 129 233 - -
Mepo2g04789 1089 Pfam AUX/IAA family 978 1062 IPR033389 -
Mepo2g04789 1089 FunFam Auxin response factor 972 1066 - -
Mepo2g04789 1089 MobiDBLite consensus disorder prediction 1068 1089 - -
Mepo2g04789 1089 Gene3D - 129 232 IPR015300 -
Mepo2g04789 1089 SMART B3_2 131 233 IPR003340 GO:0003677
Mepo2g04789 1089 FunFam Auxin response factor 295 366 - -
Mepo2g04789 1089 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 1066 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo2g04789 1089 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Mepo2g04789 1089 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Mepo2g04789 1089 MobiDBLite consensus disorder prediction 1 25 - -
Mepo2g04789 1089 SUPERFAMILY CAD & PB1 domains 990 1055 - -
Mepo2g04789 1089 Gene3D - 295 366 - -
Mepo2g04789 1089 MobiDBLite consensus disorder prediction 727 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04789 Mepo-Chr2 56168094 56174086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04789 15 478 B3 DNA Binding Superfamily AT5G20730 66.878 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo2g04789 B3 9.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04789 - - gmx:100790644 1515.36