Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04788 ATGTCACCGCCGCAATTTGCTACATCAATGAACAACCAACACTTTGAACCACATTCCTTCAAGAGGCCAAGAGATTCTCAAAACAATCATTTCAATGTGATGATTCAGAGCCACATTCTCTTTAAGACTCGTATTTGTAGTAAGTTCAGGTTTGGTGCTTGTAGGAACGCTCAAAATTGCAACTTTGCTCATGGGCTACATGAGTTAAGACAGCCACCACCAAATTGGCAGGATGGTTCTTTGAAAACAAGAGAGTGCTCTGCAATAAGCATTGGAACTTATTGGAATTGGAAGACTAAACTCTGTCTCAAGTGGCAGCATGCAGGAAGCTGTCCCTTTGGAGAAGGTTGTCTCTTTGCTCATGGAGAACCAGAGTTACAAATTCCTGGTGGAGGCATTGAAGCTGCAGTTGCCATAGCAAATTCAACAAAAACTATGGTTCCAACTTTACCAAATTCCTTATCAGTTTTTGCTAATGATGCACCTGCCACCTTCCCTGCAAGTCAACTTGTGGAAAAGGAAGATGAGCAGGCTAAGAAGAAGCGGTTACTTAAGTTGAAATTCAGCAAGACCAATCGTATTTATGGTGACTGGATTGATGATTTACCTCTTGTTCTTCCCAACTTGCCACGTGCAGTGGAGACCTGA 648 0.4244 MSPPQFATSMNNQHFEPHSFKRPRDSQNNHFNVMIQSHILFKTRICSKFRFGACRNAQNCNFAHGLHELRQPPPNWQDGSLKTRECSAISIGTYWNWKTKLCLKWQHAGSCPFGEGCLFAHGEPELQIPGGGIEAAVAIANSTKTMVPTLPNSLSVFANDAPATFPASQLVEKEDEQAKKKRLLKLKFSKTNRIYGDWIDDLPLVLPNLPRAVET 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04788 215 SUPERFAMILY CCCH zinc finger 37 71 IPR036855 GO:0046872
Mepo2g04788 215 MobiDBLite consensus disorder prediction 1 26 - -
Mepo2g04788 215 ProSiteProfiles Zinc finger C3H1-type profile. 40 67 IPR000571 GO:0046872
Mepo2g04788 215 Gene3D - 92 128 - -
Mepo2g04788 215 Gene3D - 35 72 - -
Mepo2g04788 215 SMART c3hfinal6 40 66 IPR000571 GO:0046872
Mepo2g04788 215 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Mepo2g04788 215 FunFam Zinc finger CCCH domain-containing protein 94 128 - -
Mepo2g04788 215 SUPERFAMILY CCCH zinc finger 95 127 IPR036855 GO:0046872
Mepo2g04788 215 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Mepo2g04788 215 MobiDBLite consensus disorder prediction 1 16 - -
Mepo2g04788 215 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 123 IPR000571 GO:0046872
Mepo2g04788 215 PANTHER CCCH ZINC FINGER/TIS11-RELATED 28 127 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04788 Mepo-Chr2 56156834 56158974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04788 98 127 C3H Transcription Factor Family AT1G68200 60.000 3.99e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo2g04788 zf-CCCH 1.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04788 - - psat:127136139 168.703