Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04729 ATGGCTTCCATAACTCTAATATTTGTATTTCATGTCTTTATTATTGTTATTATTTCCCTACTTCAATCTTCTAAAGGGAAACAAATAATCTGTAATACTTTATCATGCGGTGATATTGATATTGCTTTCCCTTTCGGTTTAAAAGAAAGTAATCAAGATCCTCGTTGCTATTATCCAAACCCCAGTTTCCAACTTTCATGCAACAACCAAAGCCAAACTATTCTCAACCTCCCCAAAACAGATAACTTAATCGTTAAAAACATCGATTACATGACCCAAACAATCCATGTCAACGACCCCAAAGGATGTCTCCCAAAACGGTACTTAGATAACAATTTTAACCTTTCAGATTCAGCTTTTAGATTAAAACCCCAAGTTTACAGCACTTATAACCTCACTTTCCTACGTTGTCCTTCAAATGTTACTGAAGCTCAATTTCCAATAGCACCAATCTCTTGCCTAAGAGATAAAGAACATTCAAACTCGTCTTCTTCTCCGGTTATAGTTTCATGGGCAGCACCTATTATGTCGACAACGGAGTTGTCTCAAACGTGTGAGGTGATTTCAACGGCTTTGGTTCCCTTACCGTGGATGGATATTCCTATGTGGCCATTTTGGCCTAATCTTGATAGGGATCTTGAGTTGGTTTGGACCAAACCAAGATGTGCAGACTGTTTACTTGATGGTCAAGTTTGTGGGTTCTCTGTGGATGAAAATAAGCTTCCAGTTGAATGTTTCCCCAGTCCCTCCAATCAAGGCCTTTCAAGAAGTGTCAAAATTGGCATAGCAATGGGAGTGGGAATACCAGGACTTTTGTGTCTGATTGGCTTATGTTGCAGTGTATGTGGTAAGATGAGGAGAACGATACCACTTCATGAACAAAGAAGCTCAAATCTTCCTACAATTACAATTTCCTTAGAACCACTCCCTTCTTTTGCAATGGGACTTGACGGTGCCACAATTGAAAAGTATCCCAAGACTCTTCTTGGGGAGAGTGGACGTTTATTGAAGCCAAATGACAATACTTGTTCAATTTGCCTATCTGAATATCAACCTAAAGAGACGTTGAGAAGCATCCCTGAGTGCAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTTAAAATGAATGGTACATGCCCGATATGTAGAAATTCACCGGAGACATATTCTTCAACGGGTCCTTCTTTTTCTTCATTATTGTTATCCCCAAATTCGTCACCGTTATCTTCTTCACGATAG 1245 0.392 MASITLIFVFHVFIIVIISLLQSSKGKQIICNTLSCGDIDIAFPFGLKESNQDPRCYYPNPSFQLSCNNQSQTILNLPKTDNLIVKNIDYMTQTIHVNDPKGCLPKRYLDNNFNLSDSAFRLKPQVYSTYNLTFLRCPSNVTEAQFPIAPISCLRDKEHSNSSSSPVIVSWAAPIMSTTELSQTCEVISTALVPLPWMDIPMWPFWPNLDRDLELVWTKPRCADCLLDGQVCGFSVDENKLPVECFPSPSNQGLSRSVKIGIAMGVGIPGLLCLIGLCCSVCGKMRRTIPLHEQRSSNLPTITISLEPLPSFAMGLDGATIEKYPKTLLGESGRLLKPNDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPETYSSTGPSFSSLLLSPNSSPLSSSR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04729 414 ProSiteProfiles Zinc finger RING-type profile. 343 385 IPR001841 -
Mepo2g04729 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 390 IPR013083 -
Mepo2g04729 414 Pfam Ring finger domain 341 385 IPR001841 -
Mepo2g04729 414 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 388 IPR046948 -
Mepo2g04729 414 CDD RING-H2_EL5-like 343 385 - -
Mepo2g04729 414 SUPERFAMILY RING/U-box 336 391 - -
Mepo2g04729 414 Pfam Wall-associated receptor kinase galacturonan-binding 31 99 IPR025287 GO:0030247
Mepo2g04729 414 SMART ring_2 343 384 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04729 Mepo-Chr2 55589405 55593157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04729 27 388 C3H Transcription Factor Family AT2G25410 35.121 2.80e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04729 - - tpra:123915638 537.339