Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04727 ATGGCAACTTTGCCATATTTAATTTCCTTGTTCATCCTCGCATCACTATTAGTATTACCCCAAAGAACAACAAAAAGCCAAGAGTTCACATGTGAAAGGACAACATCATGCGAAACCTTCGGACTTCCAATTCGGTTCCCGTTTTCATTAAACCAATCAAATCAAACCAATCTTTGTAGTTACCCAGGTTTCAACCTCACGTGCACCACCAACACCTCCACCACCTTCAGTGAACCCTTACTCACTCTTCCAAATTCTGAAAGCTTTGTTGTGAAACGCATCTCCTTTGTTGACCAAATAGTTTGGGTCAACGATCCCAACATGTGCTTCCCAAAACGTTTCATGTTTGACCAAAACAACTTCATGTTAAACCTTAAAGATTCACCGTTTCGGTTAAGTGACTATTACACTTTTGTTAATTTTTCGTTCCTAAACTGTCCTTCCAATTCAACCGTAACAAATATAATACCACCTATAAATTGTTTGAATTTAAGCTCTATTAGTAGCATCAACAACGACAAGAACATGAATTATTCGATTGTGGCTATGATGTCTGATCCTCCTTTTGCTACACCGTGGACATCATTATGTGAATTTATTTCGTCAGCTTTGATACCGGTGAAAGAGACGAATTGGTTGTTTTGGATTGATTATTATTCTAACATACCGTTGCAGTGGGATGATCCTGATTGTGGAAATTGTGAAGCACGTGGAGGAAGATGTGGATTGGTTGGGGATGATGCTCTTCGTCTTGCTTGTTATGATCTTCCCACCCAAGGTCTGCATGCAGGTCTTTCAAGGAAAGTCAAGTATGGTTTAAGCCTAGGTTTGGGAATACCTGGACTCCTAGGTCTAATTGTGCTTACATGGATGTTATGCAAAAAGAAGAACACAAGGAATCAAGTACAACGCCAAACAAGCACTGAATTTTCAACCTTTATTATGACGCACCCCCCAATTTTTGTTATGGGCCTTGATGGGGCAACAATCGAAAGATATCCTAAAACCCAGCTTGGTGAAAGTGGAAGATTGCCTAGACCCAGTGACAACATTTGCTCTATATGTCTTTGTGAGTATCAGCCAAATGAAGTATTAAGGACAATTCCTGAGTGTAATCACTATTTTCATGTTAATTGTATAGATGGATGGCTCAAGACAAATGCTACTTGCCCTCTGTGTCGAAATTTTCCAGAGAGATCTACTTCGTTTTCTTCAGTTTTGCCTATATCTCCAACTTCTTAA 1242 0.3945 MATLPYLISLFILASLLVLPQRTTKSQEFTCERTTSCETFGLPIRFPFSLNQSNQTNLCSYPGFNLTCTTNTSTTFSEPLLTLPNSESFVVKRISFVDQIVWVNDPNMCFPKRFMFDQNNFMLNLKDSPFRLSDYYTFVNFSFLNCPSNSTVTNIIPPINCLNLSSISSINNDKNMNYSIVAMMSDPPFATPWTSLCEFISSALIPVKETNWLFWIDYYSNIPLQWDDPDCGNCEARGGRCGLVGDDALRLACYDLPTQGLHAGLSRKVKYGLSLGLGIPGLLGLIVLTWMLCKKKNTRNQVQRQTSTEFSTFIMTHPPIFVMGLDGATIERYPKTQLGESGRLPRPSDNICSICLCEYQPNEVLRTIPECNHYFHVNCIDGWLKTNATCPLCRNFPERSTSFSSVLPISPTS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04727 413 SMART ring_2 352 393 IPR001841 -
Mepo2g04727 413 SUPERFAMILY RING/U-box 347 396 - -
Mepo2g04727 413 Pfam Ring finger domain 351 394 IPR001841 -
Mepo2g04727 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 398 IPR013083 -
Mepo2g04727 413 ProSiteProfiles Zinc finger RING-type profile. 352 394 IPR001841 -
Mepo2g04727 413 Pfam Wall-associated receptor kinase galacturonan-binding 31 105 IPR025287 GO:0030247
Mepo2g04727 413 CDD RING-H2_EL5-like 351 394 - -
Mepo2g04727 413 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 397 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04727 Mepo-Chr2 55580178 55582577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04727 36 397 C3H Transcription Factor Family AT2G25410 33.962 3.28e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04727 - - mtr:25502189 759.599