Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04647 ATGTTTCTTCTCTCTCACCAGGATGCTCCCTCTGCTTTCTCCGAAAGGCTCTTGATTGATACTAATCTAGATACTTATAAACCACCTCCTGTTCCTCTCCCTTTCAATGTGACATTAGGTGCTACTCAAATTGCACCTGTGGCTCAAGAAATTTGCTGTAACAAGAACAATAAATCCTTGCTTTCTAAAAATTTAGTTGAAGAAGAGGATACATGCCCTATATGTTTAGAAGAATATGATGCTGAAAATCCAAAACTCACCACTCAATGTGGCCATGACTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCCGTTTGTGATCAGGTTACGGTTTTCAGCACTGCCATTGATTAG 372 0.4032 MFLLSHQDAPSAFSERLLIDTNLDTYKPPPVPLPFNVTLGATQIAPVAQEICCNKNNKSLLSKNLVEEEDTCPICLEEYDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQVTVFSTAID 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04647 123 ProSiteProfiles Zinc finger RING-type profile. 72 113 IPR001841 -
Mepo2g04647 123 SMART ring_2 72 112 IPR001841 -
Mepo2g04647 123 SUPERFAMILY RING/U-box 55 119 - -
Mepo2g04647 123 CDD RING-H2_AIRP1-like 68 115 - -
Mepo2g04647 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 121 IPR013083 -
Mepo2g04647 123 Pfam Ring finger domain 70 112 IPR001841 -
Mepo2g04647 123 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 12 119 - -
Mepo2g04647 123 FunFam Putative E3 ubiquitin-protein ligase RHB1A 48 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04647 Mepo-Chr2 54787983 54788565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04647 5 123 C3H Transcription Factor Family AT5G41350 38.068 8.54e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04647 - - vra:106765380 156.377