Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04570 ATGGAGTGGAATAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGATCAAGGAACCTTAAACAACATAGAAACAATGGATGGTTCAATTAGGAGGTTTGGAGATTACAGAACAAAAGGAGAATTTTCTGTTGATTTGAAGCTTGGTCATGTTGGAAATTCTAGCACTGAATCAGGGCTTACAAAGTCCAAAGATGTTGGTGGATTTACCAAAATGACATCTTCATCATCTTCAACTTCAGGGTCATCTAAGAGAGCTAGAGCTATTAACAATGGAACTCAGATAGTTTCATGTCTTGTGGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGACTATCATAGGCGTCATAAGGTCTGTGAACTTCATTCCAAGACTGCACAGGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAGCAATGTAGCAGATTCCATGCTCTAGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAACCACAACCAGAACCTATTACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACACAATTGCTACCATTCTCAAGTTCACATGTATACCCTTCTACTGCTATGATGAACCCTACTTGGGGTGGAGGAGATGTTAGGCTTCATAGCCACAACCAACACCAACAAATGCACCATCTGGTCGATAAACAAGACCTTTTTCTTGGAACAACATCTTCAACCAGCAGCTACAAAGAAGGGAAACAAGTGTCATTCATACAAAATAACCAGCCAACAGCAGCAGCCACTGTGAACAACCAACCTCTTCAAGCTTCATCCATGAGTCGCACGTTTAGCAGGACCAATCCTTTTTCAGAAAGATACAAAATGTTTTGTGACAACAACACTTCTTGTGCTCTCTCTCTTCTGTCATCACCAGTATCACAAACACATGATCATCCTGAAAATGGATTGAATCAGATGGTGAATACTCACTCATCTTTTATGCAACCCTTAGGCTTGAGTTTGCATGACCATAGCTTGGGGTCTGTGGACTCAGTTTTGGGTTCAAATGATCAGAGTGGTCATTGTTCCTCAATGTATAACATGGGTTCTAGTGAATCCCATTCTCAGGGGAATAATAATGAAGCTTCTCCATTATTTCCTTTTCAATGGGATTAG 1173 0.4084 MEWNNLKAPSWDLTEMDQGTLNNIETMDGSIRRFGDYRTKGEFSVDLKLGHVGNSSTESGLTKSKDVGGFTKMTSSSSSTSGSSKRARAINNGTQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRSSSFLSNYQGTQLLPFSSSHVYPSTAMMNPTWGGGDVRLHSHNQHQQMHHLVDKQDLFLGTTSSTSSYKEGKQVSFIQNNQPTAAATVNNQPLQASSMSRTFSRTNPFSERYKMFCDNNTSCALSLLSSPVSQTHDHPENGLNQMVNTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQSGHCSSMYNMGSSESHSQGNNNEASPLFPFQWD 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04570 390 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Mepo2g04570 390 FunFam Squamosa promoter-binding-like protein 14 90 160 - -
Mepo2g04570 390 Pfam SBP domain 99 172 IPR004333 GO:0003677
Mepo2g04570 390 MobiDBLite consensus disorder prediction 362 390 - -
Mepo2g04570 390 MobiDBLite consensus disorder prediction 55 87 - -
Mepo2g04570 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 53 366 IPR044817 GO:0003677
Mepo2g04570 390 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Mepo2g04570 390 MobiDBLite consensus disorder prediction 163 182 - -
Mepo2g04570 390 SUPERFAMILY SBT domain 97 178 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04570 Mepo-Chr2 54167771 54171789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04570 1 302 SBP-box Gene Family AT5G50670 45.912 1.03e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo2g04570 SBP 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04570 - - mtr:25502014 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04570 2 54167771 54171789 Mepo2g04570 2 54167771 54171789 ECH
Mepo2g04570 2 54167771 54171789 Mepo3g06985 3 83487472 83491337 PCT