Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04539 ATGGCAGCTTTTTCATACCAATACCAACAACCCTTTCTTGTTGACTCTACATACTTCACCAATATAAACACTTCTCTTCCTTCTCATCTTTTTCATAATCATCAAGAACTCTCTCTCAGTAATCAAGAAACTAGCTGTGTTGATCAAAACTCTAAGAATAGCATAAGTAACAACCAGAGTCCTGAGTCATCCATGGTAGTGGACAATCTTGAAAAGGGTGAACAAGTTACTCAGAAAGTTACTTCTATGGAGAAGAAAAGAAGAATCAGAAATAAGACTTCTTTGAGTAGCCCCTTGTCTAAGGATATCTCAAAAGAAGGTAGAAGCAAAAAACAAAAGAAGAGTAGTGGTGAGGGGATGAAAGGAGAGGAGAAGAAAAAAGAAGAGAAGAAAGATCAAAAGAAAAATATTGAAGAAGTTCCAACTGGTTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGTCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGAATGAAGATATTGCAGCAACTTGTGCCTGGCTGTGATAGGGTAACTGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCTTACAAAATCAAGTAGAGTTCTTGTCAATGAAACTTGCTTCAGTGAATCCAATCTTCTTTGACTTTGCAATGGACCTAGACACACTCTTGGTTAGACCAGATCATCAGAGGTTAAATAGCATAACATCACCATCAACACCAATACCACATGTACCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGACACAATTACCACAAGCTTCCATCCTGCTAATAATGACTATGTTTTGGATTATCCAACTTCAATTTTTCTTCAAGGGCAGAGATCAAATACCTTCTTTGAGGTACCTTAG 906 0.383 MAAFSYQYQQPFLVDSTYFTNINTSLPSHLFHNHQELSLSNQETSCVDQNSKNSISNNQSPESSMVVDNLEKGEQVTQKVTSMEKKRRIRNKTSLSSPLSKDISKEGRSKKQKKSSGEGMKGEEKKKEEKKDQKKNIEEVPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDRVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPIFFDFAMDLDTLLVRPDHQRLNSITSPSTPIPHVPLCSSNHATPFADTITTSFHPANNDYVLDYPTSIFLQGQRSNTFFEVP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04539 301 SMART finulus 159 209 IPR011598 GO:0046983
Mepo2g04539 301 MobiDBLite consensus disorder prediction 42 161 - -
Mepo2g04539 301 MobiDBLite consensus disorder prediction 103 161 - -
Mepo2g04539 301 Gene3D - 150 219 IPR036638 GO:0046983
Mepo2g04539 301 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Mepo2g04539 301 FunFam Basic helix-loop-helix transcription factor 150 222 - -
Mepo2g04539 301 Coils Coil 120 140 - -
Mepo2g04539 301 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 244 IPR024097 GO:0006355
Mepo2g04539 301 MobiDBLite consensus disorder prediction 42 77 - -
Mepo2g04539 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Mepo2g04539 301 CDD bHLH_AtBPE_like 143 228 - -
Mepo2g04539 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04539 Mepo-Chr2 53844213 53845955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04539 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 44.628 5.88e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo2g04539 HLH 6.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04539 - - gmx:100796018 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04539 2 53844213 53845955 Mepo2g04539 2 53844213 53845955 ECH