Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04526 ATGCCTTTACAAGTCATGGATCAGAGGGGTGTTTCTGACCCCTCCAATTTTTTCGATGATATTTCATTTCATTCTGAGAGGAATGTTGGATTAAGGAAGCCAAAATACATGAATGCCCAACACCCCCAAGGAATGAATGGAATGGTAGCACCGCCTGGAAGTACTTTGAGTGCTCCATCACCCTTTGAAGCAAAATCTGGATTTCCGATGTCACAGACTAATCTATCGGAGGAAAGTGTACAGAAGCTACCTTTTGGTGGAGAACAAGGCATTGCTGATGTATTGAAGGGTTCAAACGGATCATTTCATCACAATCCCCAATCATGGTCTGACGTGTTCAGGCAGTCAGAACCTACGTCATATCGTATAATCGGGAACAAGGTTGTTGCAACCAAAGCTCTCCCTCGCGAAACTAGTTTATTTTCGAGCTCACTGTCGGATATGTTTAGCCATAAATTAAATATATCGGGGAATGATGTTCTGTCCGATCAGCTGACGGCTGCCAGTTCTCTTCTGGAGGAAGAACCATATAAATCTCTTGAACAGATGGAGGCTGACTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTTGCTGACGGGTTAGAATACAATTCTCATGCTAGGACTAATGATGACTCGGAATATACTGATGTTTTTAGCAGCAGTGGAGGCATGGAGCTGGAAGGAGATGAACATTTAAGTTCACTAAGAAGAACAAGTGGTTTGGATGGAGATCATGGTTTCTTTGGAGTTTCTAAAGGGAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGCGTAGAAGACTTTGAGCTAAAGACTCTATTTGAGCAATACGGAGATATCCGTACCATGTATACTGCTTGCAAGCATCGCGGCTTTGTCATGATTTCTTATTTTGATCTAAGAGCAGCACAAAGAGCAATGCAAGCCCTTCAAAGCAAGCCATTGAGGTCTCGGAAACTCGATATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATCGGTCATGGTACGCTGATGTTATCTGGTCTTGATTCATCTGTTTTAAACGATGAGTTCAAACGTATTTTTGGCTTCTATGGAGAAATTAAAGAAATCTATGAATATCCAGAGATGAAGCATCTCAAATTTATAGAGTTTTATGACGTGCGAGCTGCTGAAGCTGCACTTCGGGCATTGAACAGAATTGAAATTGCTGGAAAGCAGATCAAACTTGAACCTGGCCATCCTAGTCTGATGCAGCAGTCTCATAAGGTGCAAGATGAACGTGATATTGGTCATAGCATTATTGACAACTTATCATTAAGACAAAAGCCAACACTATCGTCTGGAGTAATTGATTCTGCTGGCTCGGAAAATGGATATAATCAGAGATTTCAATCTGCTATGCGGCAACAACCTTTGAATGGATTTATTGATAATGCATTATTTCATGTCAATTCTGGCGTTAACAACACTGCAAGAGGGGGATCTATTGGAAAATTTTCTGGTGTTTCCGAGTCCAACAATCTTATTGATGCAATGAAATTTGCATCTAGTCCAACAACATTTCATCCTCATTCTTTACCAGAGTTTCATGGCAGTTTAGCTAATGGTAGTCCTTATACCTTTTCAAGTACCATTAGCAACAAGGCTGGTAATATAGGTGCTGGAGCGACAGAAGCCTCCAATGGAAGGCATATTCAAGGAATAAGCTCAGTTGGGAACTTAGCAGAATTCAATGGAGGAGGATCATCAGGAAATGGGATCAACGCACATCATGGACTTAATCATATATGGAGTGGCTCCAATTTGCATCAGCAATCTTCACCAAGTAACATGCTTTGGCAGAAAACGCCATCGTTTGTTAATGGTTCTCCAGGCCTTCCTCAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACAACATTTGGACCATCATGTTGGATCGGCACCGGTTGTTACAGCCTCTCCCTGGGAAAGGAAAAACTCGTACTTGGGAGAGTCTCCTGAGACTTCTGCCTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTCCATGGTTCTTGGCAAATGCGTCCAATGGAATTTTCTGCTCATAATAACATGTTTTCTCATGGTGGTGGGAATGGTACTGAACTCTCGTCCAGTGCTGGACAGAGCTCGCCTAATCCGTTGTCACATATTCTCTATGGTAGACAGTCAACGACTGCAACGTCAAAATTTGATCCTACCAATGAACGAATGAGAAACCTCTACAGCCGTAAAAGTGAAGCAAACACCACTGGCAATGGGGATAAAAAACTATATGAACTTGACCTGGGCCGCATATTGCGCGGAGAAGACAGCCGAACAACGCTCATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTCTATTTACCAATAGACTTCAAGAACAAATGTAATGTTGGATATGCATTCATAAATATGATTGATCCTGCTCAAATTATTCCTTTCCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCGTCACTTGCATATGCCCGAATCCAAGGAAGAGCTTCTCTTGTTTCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCGATTCTCTTTCAGACAGAAGGCCCAAATGCCGGTGATATGGAGCCTTTCCCCATTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGCAATGCTGGCAACGAGGAGAATCGCATCCAAGCTACTCCTTCAACTTTTGCAAGCGGAGAAGAGACTGCAAATGGAAACTCCGATTGA 2895 0.4197 MPLQVMDQRGVSDPSNFFDDISFHSERNVGLRKPKYMNAQHPQGMNGMVAPPGSTLSAPSPFEAKSGFPMSQTNLSEESVQKLPFGGEQGIADVLKGSNGSFHHNPQSWSDVFRQSEPTSYRIIGNKVVATKALPRETSLFSSSLSDMFSHKLNISGNDVLSDQLTAASSLLEEEPYKSLEQMEADYIHNLLPDEDDLFSGVADGLEYNSHARTNDDSEYTDVFSSSGGMELEGDEHLSSLRRTSGLDGDHGFFGVSKGKLPFVEQPSRTLFVRNINSSVEDFELKTLFEQYGDIRTMYTACKHRGFVMISYFDLRAAQRAMQALQSKPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDEFKRIFGFYGEIKEIYEYPEMKHLKFIEFYDVRAAEAALRALNRIEIAGKQIKLEPGHPSLMQQSHKVQDERDIGHSIIDNLSLRQKPTLSSGVIDSAGSENGYNQRFQSAMRQQPLNGFIDNALFHVNSGVNNTARGGSIGKFSGVSESNNLIDAMKFASSPTTFHPHSLPEFHGSLANGSPYTFSSTISNKAGNIGAGATEASNGRHIQGISSVGNLAEFNGGGSSGNGINAHHGLNHIWSGSNLHQQSSPSNMLWQKTPSFVNGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWERKNSYLGESPETSAFHLGSPGNGGFHGSWQMRPMEFSAHNNMFSHGGGNGTELSSSAGQSSPNPLSHILYGRQSTTATSKFDPTNERMRNLYSRKSEANTTGNGDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVSHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPIGANVRVRPGKSRNAGNEENRIQATPSTFASGEETANGNSD 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04526 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Mepo2g04526 964 Pfam RNA recognition motif 2 797 893 IPR007201 -
Mepo2g04526 964 SUPERFAMILY RNA-binding domain, RBD 799 883 IPR035979 GO:0003676
Mepo2g04526 964 FunFam Protein MEI2-like 1 353 444 - -
Mepo2g04526 964 CDD RRM3_MEI2_like 800 885 IPR034454 -
Mepo2g04526 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Mepo2g04526 964 SUPERFAMILY RNA-binding domain, RBD 266 425 IPR035979 GO:0003676
Mepo2g04526 964 SMART rrm1_1 355 423 IPR000504 GO:0003723
Mepo2g04526 964 SMART rrm1_1 270 338 IPR000504 GO:0003723
Mepo2g04526 964 SMART rrm1_1 799 875 IPR000504 GO:0003723
Mepo2g04526 964 Gene3D - 352 446 IPR012677 -
Mepo2g04526 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Mepo2g04526 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Mepo2g04526 964 MobiDBLite consensus disorder prediction 939 964 - -
Mepo2g04526 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 83 945 - -
Mepo2g04526 964 MobiDBLite consensus disorder prediction 920 964 - -
Mepo2g04526 964 MobiDBLite consensus disorder prediction 714 739 - -
Mepo2g04526 964 CDD RRM1_MEI2_like 268 343 IPR034453 -
Mepo2g04526 964 Gene3D - 263 351 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04526 Mepo-Chr2 53683042 53690683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04526 267 420 Eukaryotic Initiation Factors Gene Family AT1G71770 25.767 2.54e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04526 2 53683042 53690683 Mepo3g06946 3 83096775 83104714 PCT