Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04446 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCTCTTAAGGCTGGAGTTGCCAAGCATGGGGTGGGAAAATGGCGTACAATAGTCAAGGATCCTGAATTTAACCGTGTCTTGTTTCTTCGCTCAAATGTCGATCTCAAGGATAAATGGAGAAATCTGAGTGTGACGGGAAATGGATCGAGCTCCAGGGAGAAGTCTAAGGGAGCAATCAAAAGGGTGAATCATCCGGTACCAAAACAGGATGACAACTCTATGGCTATCACCGCGGTTACTGGTCCATCCGATGATGATGAAATTGTTGATGCCCAGCCTCTTCAAGTCTCAAGAGACATGCCGCACATTGCTGGTCCGAAAAGATTAGATAACCTTATATTGGAAGCTATATCTAGCTTGAATGAGCTTGGTGGTTCTAATACAACAACTATTGCTTCTTTCATAGAGGACCAATACCGGCCACCGGCAGACTTCAAAAAGTTGTTGTCAGCAAAACTAAAGTATCTTACATCTAGCGGAAAACTGATTAAGGTACAGCCGCTGGCTGTGGCTTTGGGCTGA 564 0.4521 MGAPKQKWTSEEEAALKAGVAKHGVGKWRTIVKDPEFNRVLFLRSNVDLKDKWRNLSVTGNGSSSREKSKGAIKRVNHPVPKQDDNSMAITAVTGPSDDDEIVDAQPLQVSRDMPHIAGPKRLDNLILEAISSLNELGGSNTTTIASFIEDQYRPPADFKKLLSAKLKYLTSSGKLIKVQPLAVALG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04446 187 SMART sant 4 59 IPR001005 -
Mepo2g04446 187 MobiDBLite consensus disorder prediction 58 85 - -
Mepo2g04446 187 FunFam Telomere repeat-binding factor 1 8 87 - -
Mepo2g04446 187 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mepo2g04446 187 SMART h15plus2 119 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g04446 187 FunFam Telomere repeat-binding factor 1 2 58 - -
Mepo2g04446 187 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g04446 187 PANTHER SINGLE MYB HISTONE 4 1 180 IPR044597 GO:0003691
Mepo2g04446 187 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo2g04446 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mepo2g04446 187 Gene3D - 8 85 - -
Mepo2g04446 187 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mepo2g04446 187 Gene3D - 120 184 IPR036388 -
Mepo2g04446 187 SUPERFAMILY "Winged helix" DNA-binding domain 122 180 IPR036390 -
Mepo2g04446 187 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Mepo2g04446 187 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04446 Mepo-Chr2 52966361 52970087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04446 1 180 Single Myb Histone (SMH) Gene Family AT1G49950 63.536 5.69e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo2g04446 Linker_histone 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04446 K09422 - gmx:778173 247.669