Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04406 ATGGAAACAAATGAACAAAACCGTATTATTCTCCAACAAGATCATCATCAAGTTCCTATGAATTCTTCTGTGATTTGGCCACCAAATAACTACAACAATATGATCATGGCACCACCACCACCACCATCTTCATCAGGTTCACTCAGTGACATATTAGGGATCCACCGAATCGAAGACGTAGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGACATAGACCCAGCAACGATTCGAAAACCAAAGCGAAGAAACGTCCGAATCAGCGATGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTAGGTATGTTAAGTTTTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACAACTCCTAGTGTTTTGTTATTGTCTCCTTCTTCCGGTTGTGACGTCTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTGCCCGCTGGAATTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGATGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA 738 0.4119 METNEQNRIILQQDHHQVPMNSSVIWPPNNYNNMIMAPPPPPSSSGSLSDILGIHRIEDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTTPSVLLLSPSSGCDVWPFAPNLLLTSTTAATVDLPAGIQFDAGGHSHVHACDGSSSFNHHEVISE 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04406 245 Pfam Helix-loop-helix DNA-binding domain 110 149 IPR011598 GO:0046983
Mepo2g04406 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Mepo2g04406 245 Gene3D - 103 170 IPR036638 GO:0046983
Mepo2g04406 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 170 IPR036638 GO:0046983
Mepo2g04406 245 CDD bHLH_AtIND_like 101 158 - -
Mepo2g04406 245 FunFam BHLH transcription factor 103 167 - -
Mepo2g04406 245 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 43 180 IPR045843 GO:0003700|GO:0006355
Mepo2g04406 245 SMART finulus 106 155 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04406 Mepo-Chr2 52595596 52596333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04406 67 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 81.651 3.46e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo2g04406 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04406 - - psat:127102813 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04406 2 52595596 52596333 Mepo2g04406 2 52595596 52596333 ECH