Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04405 ATGAGCGGAGGTAGCAGAAAGCTATCTTCAAACTGGGATTCAAGAGAGGAACCTGAATTTCCACCCGAGAGTGTTACTAAAAGCAATAATTCAAGGTATTTGGAAAGAAATGATACGCGAAAACCAAGAATGAGGTTTTCACGCAAGGAGCCTTTTTCGGGAGTCAGAGGTTCAAATAAGGATGACGAAGACTACCAAGTTTTGGATGCAACAATTGCAAAAGACACTGATGGAAGCTACAGTATGAAAATGTCTCCAGAGTTTGAGGAATGGAATAATAGGGAACATAGTCAATATTCAAAAAATGATTATGGCAGGTCTAGGAGAAGTAGGAGCCGGAGCCCTCCACATGGTTTTAGTTATTCAGCTGTCGATGATAGGAACAGAACGAGGGATGGCAGATTCGCACAACCTTGTAGAGATTTTGCTGTTGGGAACTGCAGAAGAGGCAGCCATTGTCATTTCCTTCACCATGATAAGCAAAGTTATGAGGATAGCAGGGAAAGTAGGCACAGGCCAGATGGACCCAGATATTCTAATCCCCGTGAGAGTGGGGATTATTCTCTTACAAATCGAAGATCTAATGAAGCTTGCATTTATTTTGCAAAGGGGAGGTGTAGAATGGGAGAATCATGCAAATATGTGCATCATGACAATTCTGATGGGTTTGATAAAATTTCGGCAGATGAATCATCTAGGGAAAGGGAAATTGATAAAAGACACATAGAGCAATCATTCAAGCAGGGTGACCAGCATTATCCAAACCACAACAATAATACTCCTTGCAAATTTTTTGCTTTTGGGAATTGTCGTAATGGTAAAGATTGTAGGTTTTCTCATGATAGGCAAGCATTTACCAGCCCTAGATTAAGGGATGATAGGTCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGATAGACCAAAATTGAGCGATTCAGTTGCTCCTAATGGAAGGCTAAGAGACGATAGATGTGGTTCAGATGGCAGAATGGCTGATGTAGATAAAGTTTGGGATGGTCCAATGCAGACTGATTTAGTTTCTGTCTCTGGCACAGTAAATTTGGTTGAGGACAACAAAAATGGAATCATAGGCGCCCCAGAACCTGGATTCATGGCTTGGCCAATGAATGATGGATCGGGCCATAGCTTAGACAGGAACAGAATGCATAATGAATCACCATTTTCAATTGATAAGAAGGAAGCCAACTGTAGGACGGCAGAAAATGCATTTGACAACATTCTCATTTCCCAGTCAGTAGGTGGAGGCATGTGGCCTGGTGATGAACAGATGTCTCCTGATTGGAATTATGGTGCGAGATCTTCCAGTCATATTAAAGATGAGCATGTGCAGAATAAGCAGCAAGTTGCTCCAGGACAAGGACTAAATCACAATGCTCAGAATATAACTGCTTCCCATTTGGTTGGACAGAGTCAAGCAACAGTTTCCATTGTTCCCCCAAGAGCAAGAATTATTGAAGGTATACAGAACCAGAAACTTTCAACTGAGAAAAACTACATTGTAGAATCAAATATCATGAATCAAATCAGTTCTGGACATACTCCAACTCAGAACGGAGTCAGCAAAGAACAGCTTGCTCAACTTAGCTGCCTCTCAGCCTCTCTCGCACATATCCTCGGAACTGGTCAGCAGCTCCCACAAGTTCATTCTACTCTAAAGCCTTGTGATGCAAAGGCCACTCTCTTCGGAAACAAAATTGAAGGGTCTGCTAATCCTGTTTCAATGACATTCATCAAGCCAGATCCTGCTATTGGATTGAAACAGTATGATCCAATGTTTGACAGTATGGAGCCCATGAATATTAGTGCAAATGGGGTCCCTCCAACCTTTTCTCCTAGTATAAAGATTCCAAAAAATGCAGTGGAAATTCTGCCACCATTATCTAACCTAGGACAAAATTTTGATGATTCTCTTAAAAAGGAGACTAACGAAATGGTAGCTGAAGAAAAGCCAATCTCTCAATCTGAAAATAAAGTTACAGAAGAGAATAGTCCTATGGGAGACATGGACCAAAATGATGGACCTAATGAGGCCAAGAAAACAAAGGACGCGAAGGGGAGTCGTGCATTTAAATCTTCATTGGTAGAGCTTATTAAGGAGATTCTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAGGTTACTGATAAAGTAACTGGTACAGTACAGCGGGTACATATTCCTCAGACACGAGAGAAAATTGAACGCTATTTATCAGTTTCGAAACCAAAGGTTAACAAACTTATACAGGTCAGTGGTGGTTTTCTTACAGATTTCCGTCATATGTATGAAGGGTTCAAAATCTTGTCTCCCATTTAA 2367 0.4085 MSGGSRKLSSNWDSREEPEFPPESVTKSNNSRYLERNDTRKPRMRFSRKEPFSGVRGSNKDDEDYQVLDATIAKDTDGSYSMKMSPEFEEWNNREHSQYSKNDYGRSRRSRSRSPPHGFSYSAVDDRNRTRDGRFAQPCRDFAVGNCRRGSHCHFLHHDKQSYEDSRESRHRPDGPRYSNPRESGDYSLTNRRSNEACIYFAKGRCRMGESCKYVHHDNSDGFDKISADESSREREIDKRHIEQSFKQGDQHYPNHNNNTPCKFFAFGNCRNGKDCRFSHDRQAFTSPRLRDDRSRSNQGEDQVLDRPKLSDSVAPNGRLRDDRCGSDGRMADVDKVWDGPMQTDLVSVSGTVNLVEDNKNGIIGAPEPGFMAWPMNDGSGHSLDRNRMHNESPFSIDKKEANCRTAENAFDNILISQSVGGGMWPGDEQMSPDWNYGARSSSHIKDEHVQNKQQVAPGQGLNHNAQNITASHLVGQSQATVSIVPPRARIIEGIQNQKLSTEKNYIVESNIMNQISSGHTPTQNGVSKEQLAQLSCLSASLAHILGTGQQLPQVHSTLKPCDAKATLFGNKIEGSANPVSMTFIKPDPAIGLKQYDPMFDSMEPMNISANGVPPTFSPSIKIPKNAVEILPPLSNLGQNFDDSLKKETNEMVAEEKPISQSENKVTEENSPMGDMDQNDGPNEAKKTKDAKGSRAFKSSLVELIKEILKPTWKDGKITKEDYKTIVKKVTDKVTGTVQRVHIPQTREKIERYLSVSKPKVNKLIQVSGGFLTDFRHMYEGFKILSPI 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04405 788 SMART c3hfinal6 257 282 IPR000571 GO:0046872
Mepo2g04405 788 SMART c3hfinal6 134 159 IPR000571 GO:0046872
Mepo2g04405 788 SMART c3hfinal6 193 218 IPR000571 GO:0046872
Mepo2g04405 788 MobiDBLite consensus disorder prediction 92 110 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 649 693 - -
Mepo2g04405 788 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 766 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 316 335 - -
Mepo2g04405 788 ProSiteProfiles Zinc finger C3H1-type profile. 257 283 IPR000571 GO:0046872
Mepo2g04405 788 ProSiteProfiles Zinc finger C3H1-type profile. 133 160 IPR000571 GO:0046872
Mepo2g04405 788 Gene3D - 134 221 - -
Mepo2g04405 788 SUPERFAMILY CCCH zinc finger 257 281 IPR036855 GO:0046872
Mepo2g04405 788 SUPERFAMILY CCCH zinc finger 193 217 IPR036855 GO:0046872
Mepo2g04405 788 MobiDBLite consensus disorder prediction 92 126 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 160 179 - -
Mepo2g04405 788 Gene3D - 232 292 - -
Mepo2g04405 788 Pfam RNA-binding, Nab2-type zinc finger 138 157 - -
Mepo2g04405 788 Pfam RNA-binding, Nab2-type zinc finger 197 216 - -
Mepo2g04405 788 Pfam RNA-binding, Nab2-type zinc finger 261 280 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 287 335 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 287 308 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 33 67 - -
Mepo2g04405 788 MobiDBLite consensus disorder prediction 160 187 - -
Mepo2g04405 788 ProSiteProfiles Zinc finger C3H1-type profile. 192 219 IPR000571 GO:0046872
Mepo2g04405 788 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04405 Mepo-Chr2 52564339 52572063 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo2g04405 zf-CCCH_2 0.0056 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04405 - K22909 gmx:100783856 791.571