Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04398 ATGGTAAGAGACGATTTATGCATCACCGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGACGTCATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACCTATGACCGTTCAAGTATCCAACGCTGGCTCGATAACGGTAACAACACTTGTCCTGCCACTATGCAGATTCTTCAAACAAAGGATTTCGTTCCGAACCGCACGTTACAGAGGCTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAGTCGACTCGCCGGAATCTCCGTTATCAACTGAGTCCGTTGATAGACGTGATCAATTACTTGTTGCTATCACTGATTTTGATTCAGGTAGTGAGAACCGGTTCGAGTCGCTTGTGAGAATCGTACGGTTCGCGAAAGATTCTGAAGAGAATTGTGTTTTTCTTGCCAAAACGGAGGGATTCGTGTGCGTTCTGGTAAGTTTTCTTGATAATGTTGATGGCAGAATTGAACGGAGTGTGGAATTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTGAGTAAAATTGAGAATCGTGACTCATTTTTGAAGAGCAAAAACGAGGACGAAGGTAAGAGTATACTAGATTCTTTGCTTCTTGTTCTTCAACAAGGAAGCTGCGAATCAAAAATTGCATCGGTTAGGGTTTTGAAATTCATAGCAGTGGACTCAGAATCGAAGCTTCTAATAGCGGAAAAAGAAGGTTTATTATCAGAATTGCTCAATCAAATCACGCCGGAGAAAGATCAAAACCTAATGGAGAACGCACTTTCATGTCTGGTAACAATTTCAACGCCGAAACGGAACAAAGTGAAGCTAGTTCATATAGGAGCAGTGAAGGTATTCTCGAACCTTCTAACTGCAACGAATTCATGCGTTTCGTTGACGGAGAAGGTATTGAAACTTCTAGAAACGGTGTCGTCAACAAAGGAAGGTAGGTCGGAGATATGCGAGGCGCCGTCGTGCGTGGCGGCGATAGTGAACAAAGTATTGAAAGTATCCACCGTGGCAACGGAGCACGCGGTTACAATACTGTGGAGTGTGTGTTATTTGTTTCGTGATCAAAAGGCACAAGAAGCTGTTACGAAAGCGAATGGATTGACGAAGATTTTGCTTCTGATGCAAAGTAATTGTTCGCCACAAGTTCGTCAAATGTCTGTAGATTTGCTTAAGATTTTTCGTGTTAATTCTAAGTCTTGTCTTTCTTCGTATGATACCAAAACTACTCATATTATGCCATTTTGA 1254 0.4306 MVRDDLCITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSPESPLSTESVDRRDQLLVAITDFDSGSENRFESLVRIVRFAKDSEENCVFLAKTEGFVCVLVSFLDNVDGRIERSVELLEQVVIALDLVLSKIENRDSFLKSKNEDEGKSILDSLLLVLQQGSCESKIASVRVLKFIAVDSESKLLIAEKEGLLSELLNQITPEKDQNLMENALSCLVTISTPKRNKVKLVHIGAVKVFSNLLTATNSCVSLTEKVLKLLETVSSTKEGRSEICEAPSCVAAIVNKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04398 417 SUPERFAMILY RING/U-box 6 79 - -
Mepo2g04398 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
Mepo2g04398 417 SUPERFAMILY ARM repeat 195 403 IPR016024 -
Mepo2g04398 417 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Mepo2g04398 417 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Mepo2g04398 417 CDD RING-Ubox_PUB 11 63 IPR045210 -
Mepo2g04398 417 PANTHER WDSAM1 PROTEIN 9 405 IPR045185 GO:0061630
Mepo2g04398 417 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Mepo2g04398 417 Gene3D - 101 406 IPR011989 -
Mepo2g04398 417 FunFam RING-type E3 ubiquitin transferase 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04398 Mepo-Chr2 52515907 52517587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04398 1 417 U-box Gene Family AT5G64660 55.245 7.60e-149 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04398 - - cam:101496984 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04398 2 52515907 52517587 Mepo2g04398 2 52515907 52517587 ECH
Mepo3g06803 3 81780650 81782346 Mepo2g04398 2 52515907 52517587 ECH
Mepo2g04398 2 52515907 52517587 Mepo3g06803 3 81780650 81782346 PCT