Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04390 ATGTATGCTTCTACTTCTTTTACTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTTATCCAAAACCCAGTTGATCATCAATCATTAACAAACTCCCCTGTTTTAACAAAAAACCATAATTCAACAGACTCATATTTTGGAGCTCGTGAATTTGATTCAAATGTTATAATGATACTTGCAGTTCTATTGTGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGGTTTAAGGTTTTCAAACATAGCCCTAAACAACGACTCTTCTTCGAGTTCGAGCAGCAACACATCACAACAATTGGCCAACAAAGGAATCAAGAAGAAAGCTCTCAAAACATTCCCCACAGTGAGCTATTCAGCTGAGTTGAAACTTCCAAGTTTGGACACAGAGTGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAGGTACGCATTTTGCCTAAATGCAACCATGGATTTCATGTTCGTTGCATTGACAAATGGTTAAAGGAACACTCATCATGTCCCAAGTGTAGACAGTGCCTTCTTGAAACTTGTCGAAAGATTGTTGGGTCACAACAACCAATTGTTGTACCAGTGCTAGAAACCGTTATAAGGATCCAACCACTAGAGCATGAAGCTTTGGAACGAAACTACAGAGAAATATAA 678 0.3864 MYASTSFTSPLLHELLVESHTRRLLIQNPVDHQSLTNSPVLTKNHNSTDSYFGAREFDSNVIMILAVLLCALICSLALNSIIRCGLRFSNIALNNDSSSSSSSNTSQQLANKGIKKKALKTFPTVSYSAELKLPSLDTECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIVGSQQPIVVPVLETVIRIQPLEHEALERNYREI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04390 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Mepo2g04390 225 SMART ring_2 140 181 IPR001841 -
Mepo2g04390 225 SUPERFAMILY RING/U-box 118 187 - -
Mepo2g04390 225 FunFam RING-H2 finger protein ATL73 100 187 - -
Mepo2g04390 225 CDD RING-H2_EL5-like 139 182 - -
Mepo2g04390 225 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Mepo2g04390 225 PANTHER RING-H2 FINGER PROTEIN ATL78 16 217 IPR044602 GO:0016567|GO:0016740
Mepo2g04390 225 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04390 Mepo-Chr2 52427154 52428044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04390 57 186 C3H Transcription Factor Family AT3G10910 52.632 2.53e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04390 K19040 - gmx:100780127 322.783