Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04389 ATGTTTGCTTCTACTTCCTTTACTTCACCACTTCTCCATGAACTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAATCCAATTGATCATCAATCACTTAAAATCAACTCCCGTATTTTCACAAATAGCCACAATTCAACCGACTCATATTTTGGAGCTCCTGAATTTGATTCAAATGTTGTGATGATACTTGCAGTTGTATTATGTGCTTTTATTGGTTCCCTTGCATTAAACTTTGTCATAAGGCGTGCCTTAATATTTTTAAATGTAGCTCTCAACAACGACTCTTCTTCGAGTTCAAGCAACAACAATTCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAAGAAATTTCCTACAATGAGCTATTCCACCGAGTTGAATCTACCAAGTTTGGATGCAGAATGTATAATATGTCTCTCAGAGTTCACAAAGGGCGAAAAGGTGCGCATTTTGCCTAAATGTAACCATGGTTTTCATGTTTGTTGCATTGACAAATGGCTAAAAGAACACTCATCATGTCCAAAGTGTAGACAATGTCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAGGTGCAACCAATTTTGTTACCAGTGCCAGAAACTATTATAAGGATCGAACCACTAGAGCACGAAGCTTTGGAACGTAACTATAGAGAAATACAACTTAACAATTAA 696 0.3736 MFASTSFTSPLLHELLVESHTRRLLFQNPIDHQSLKINSRIFTNSHNSTDSYFGAPEFDSNVVMILAVVLCAFIGSLALNFVIRRALIFLNVALNNDSSSSSSNNNSPQLVNKGIKKKALKKFPTMSYSTELNLPSLDAECIICLSEFTKGEKVRILPKCNHGFHVCCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPILLPVPETIIRIEPLEHEALERNYREIQLNN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04389 231 CDD RING-H2_EL5-like 140 183 - -
Mepo2g04389 231 SUPERFAMILY RING/U-box 119 188 - -
Mepo2g04389 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
Mepo2g04389 231 Pfam Ring finger domain 140 183 IPR001841 -
Mepo2g04389 231 PANTHER RING-H2 FINGER PROTEIN ATL78 17 219 IPR044602 GO:0016567|GO:0016740
Mepo2g04389 231 SMART ring_2 141 182 IPR001841 -
Mepo2g04389 231 FunFam RING-H2 finger protein ATL73 100 188 - -
Mepo2g04389 231 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04389 Mepo-Chr2 52422583 52423407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04389 58 187 C3H Transcription Factor Family AT3G10910 48.120 1.05e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04389 K19040 - gmx:100780127 304.679