Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04388 ATGTATGCTTCTACTTCTTTTACTTCACCACTTCTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAAATCCAATTGTTCATCAATCAGTTAAAATCAACTCCCCTATTTTCACAAACAACAACAATTCAACCGACTCAAAATTCGGAGCTCGTGAATTTGATTCAGATGTTGTGATGATAATTGCAGTCCTATTATGTGCTTTTATTTGTTTACTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGATTTCAAACAACAATGAATCTTTTTCGAGTTCAAGCAACAACAATTCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAAGAAATTTCCTATAGTTATCTATTCAACTGAGTTGAAACTACCAAGTTTAGATGCAGAATGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAATTGCGCATTTTGCCTAAATGCAACCATGGTTTTCATGTTCGTTGTATTGACAAATGGCTAAAAGAACACTCATCATGTCCCAAGTGTAGACAGTGTCTTCTTGAAACCTTTCAGAAGATTGGTGGGTCGCAGGTGCAACCAATTGTGTTGCCGGTGCCAGAAATTATTATAAGGATCCAAATGTAA 636 0.3664 MYASTSFTSPLLHELLVESHTRRLLFQNPIVHQSVKINSPIFTNNNNSTDSKFGAREFDSDVVMIIAVLLCAFICLLALNSIIRCALRISNNNESFSSSSNNNSPQLVNKGIKKKALKKFPIVIYSTELKLPSLDAECMICLSEFTKGEKLRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETFQKIGGSQVQPIVLPVPEIIIRIQM 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04388 211 Pfam Ring finger domain 137 180 IPR001841 -
Mepo2g04388 211 CDD RING-H2_EL5-like 137 180 - -
Mepo2g04388 211 PANTHER RING-H2 FINGER PROTEIN ATL78 17 193 IPR044602 GO:0016567|GO:0016740
Mepo2g04388 211 SMART ring_2 138 179 IPR001841 -
Mepo2g04388 211 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Mepo2g04388 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 184 IPR013083 -
Mepo2g04388 211 FunFam RING-H2 finger protein ATL73 98 185 - -
Mepo2g04388 211 SUPERFAMILY RING/U-box 116 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04388 Mepo-Chr2 52419498 52420133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04388 36 184 C3H Transcription Factor Family AT3G10910 47.097 6.38e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04388 K19040 - gmx:100780127 268.085