Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04387 ATGTATGCTTCTACTTCCTTTACTTCACCACTTCACCATGAGCTTCTTGTGGAATCCCACACAAGAAGGTTACTATTCCAAAACCCAGTTGATCATCAATCACTAACCAACTCCCCAGTTCTCACACAAAACCACAATTCAACTAACTCGTATTTTGGAGCTCGTGAGTTTGAATCAAATGTTGTGATGATAGTTGCTGTCCTATTGTGTGCTATTATTTGCTCAATTGCATTAAACTCCATTGTAAGGTGTGCCTTAAACGTAGCCATCATCAACGACTCTTCTTCGAGTTCTAGTAGCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCCACAGTGAGCTACTCAACTGAGTTGAAACTACCAAGTTTGGACATAGAGTGTATGATATGTCTCTCAGAGTTCTCAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAAGCTCATTCATCATGCCCCAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCGCCTCTTATGTTGCCAGTGCCAGAAACTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAACTATAGGGAAGAAAGCAGATAA 657 0.4125 MYASTSFTSPLHHELLVESHTRRLLFQNPVDHQSLTNSPVLTQNHNSTNSYFGAREFESNVVMIVAVLLCAIICSIALNSIVRCALNVAIINDSSSSSSSNKGIKKKALKTFPTVSYSTELKLPSLDIECMICLSEFSKGEKVRILPKCNHGFHVRCIDKWLKAHSSCPKCRQCLLETCRKIVGSEAPPLMLPVPETIIRIQPLDHEAFECNYREESR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04387 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 176 IPR013083 -
Mepo2g04387 218 SUPERFAMILY RING/U-box 108 177 - -
Mepo2g04387 218 FunFam RING-H2 finger protein ATL73 92 177 - -
Mepo2g04387 218 SMART ring_2 130 171 IPR001841 -
Mepo2g04387 218 PANTHER RING-H2 FINGER PROTEIN ATL78 16 207 IPR044602 GO:0016567|GO:0016740
Mepo2g04387 218 CDD RING-H2_EL5-like 129 172 - -
Mepo2g04387 218 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Mepo2g04387 218 Pfam Ring finger domain 129 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04387 Mepo-Chr2 52412209 52412865 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04387 41 178 C3H Transcription Factor Family AT1G76410 45.517 5.50e-40 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04387 K19040 - gmx:100780127 291.967