Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04385 ATGTATGCTTCTACTTCCTTTACTTCACCATTCCTCCATGAGCTTCTTGTAGAATCACACACAAGAAGGTTACTCTTCCAAAACCCAGTTGATCATCAATCACTAACCAACTCCCCTGTTTCCACAAAAAACCATAATTCAACCGACTCATATTTTGGAGCTCATGAATTTGATTCAAAAGTTGTGATGATACTTGCAGTCATATTATGTGCTTTTATTTGCTCACTTGCATTTAGTTCCATTATTAAGTGTGCCTTAAGGTTTTCAAACGTAGCCATCAACAACGACTCTTCTAGGTCGAACAGCAATCCTTCGCCTCAATCGGTCAATAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCCACAGTAAGTTATTCAACTGAGTTGAAACTTCCAAATTTGGATACGGAGTGCATGATATGTCTCTCAGAGTTCACAAAGGCTGAAAAGGTGCGCGTTTTGCCTAAATGCAACCATGGTTTCCATGTTCGTTGCATTGACAAATGGCTAAAAGAACACTCATCATGTCCAAAGTGTAGACAATGCCTTCTTGAAACTTGTCAGAAGATTGGTGGGTCGCAAGTGCAACCAATTGTGTTGCCAGTGCCGGAAATTGTTCTAAGGATCCAACCACTGGAACCTGAAGCTTTGGAGCGTAACTATAGGGAAATATAA 678 0.4012 MYASTSFTSPFLHELLVESHTRRLLFQNPVDHQSLTNSPVSTKNHNSTDSYFGAHEFDSKVVMILAVILCAFICSLAFSSIIKCALRFSNVAINNDSSRSNSNPSPQSVNKGIKKKALKTFPTVSYSTELKLPNLDTECMICLSEFTKAEKVRVLPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCQKIGGSQVQPIVLPVPEIVLRIQPLEPEALERNYREI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04385 225 CDD RING-H2_EL5-like 138 181 - -
Mepo2g04385 225 SUPERFAMILY RING/U-box 117 187 - -
Mepo2g04385 225 SMART ring_2 139 180 IPR001841 -
Mepo2g04385 225 PANTHER RING-H2 FINGER PROTEIN ATL78 17 217 IPR044602 GO:0016567|GO:0016740
Mepo2g04385 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 185 IPR013083 -
Mepo2g04385 225 Pfam Ring finger domain 138 181 IPR001841 -
Mepo2g04385 225 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Mepo2g04385 225 FunFam RING-H2 finger protein ATL73 97 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04385 Mepo-Chr2 52402934 52403611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04385 57 185 C3H Transcription Factor Family AT3G10910 48.872 8.10e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04385 K19040 - gmx:100780127 318.546