Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04367 ATGGACTTCGACGAGTACGAGTACCTGGAGAAGACGGTGGAGGAGCAACAGGAAGACAAGGATTCATCCAAAAAGAAGAACACTGACATCACCGACATTAAATCCGAGAGGACTTACCGGAAGCACGGCGTCGACGACGATCTCGACGGCGGTGAAGATAGGCGGAGCAAGAGGTCACGCGGAGGTGACGACGAGAATGGCTCTAAGAAGGATCGCGACAGGGACAGAGACCGTGAACGTGACCGTGAACGATCTTCCGGTCGTCACCGGGAGAGGGACGGAGAGAGAGGTAGTAGAGAGAAGGAGAGGGAGAAGGACGGAGAGAGAGGTGGGAGAGATAAGGAGAGGGATAGGGAGAGAGAAAAGGAGAGGGAGAGGAGAGATAAGGAAAGGGAAAAGGAACGGGAGAGAAGAGATAAGGAGAGAGAGAAGGAACGGGCTGAGAGAGAAAAAGAGGAGAAAGAGAGACCAAGGAGGAGTATGAGTCGTCCTGAGAGAGACAGAGGAGAGCGAGATTTCGAAAACAGAGATGGCAGGAGATTCAGGGATAAGAAAGAGAATGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAAGCAACGGAGAGAGATGTATACGAGTTCTTCTCGAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCACGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTACTTCTCGGGCAACCTGTAATGGTGAAACCTTCTGAGGCCGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGGCTAATCTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTTCCTCTTGACATGGAGACGGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCAAAGGCAGCTCAGAGTTTAAATGGGAAATTGGAGATTGCTGGCAGGACTATAAAGGTTTCATCTGTTACAGATCATGTTGGAAGTCAGGATACAACTACAAAATCTGCAGACTTTGATGATGATGAAGGAGGATTGACCTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGATTGGCCGGTACTGACATTCCCACAAGCATTGGTGTGCAAACTGTGAATGGGTCGGTTCCTGTTCAGCAGGCTTTTAGCATGCCTTTTGGCAATCCAGGTGTTATACCCGCATCAGTTCTACCAACACAAGTCATGCCTACCCCTGTGGTAGAACCAGTAGGAATTCCCAGCGAGTGTTTGTTATTGAAGAATATGTTTGATCCAAGCACCGAGACAGAACCAGATTTTGATATAGACATAAAAGAGGATGTAGAGGAAGAGTGTTCTAAATACGGCCGGGTGATGCATATTTATGTCGACAAAAGAAGTGCAGGTTTTGTGTACTTGCAGTTTGAAACAGTGGAAGCATCAAGTGCTGCACAACGAGCAATGCACATGAGATGGTTTGCACGCAGGTTGATCACAGCTATCTTCATGCAACCACATTTATATGAAGCCAAATTTAAGGACGAATCTTGA 1695 0.4684 MDFDEYEYLEKTVEEQQEDKDSSKKKNTDITDIKSERTYRKHGVDDDLDGGEDRRSKRSRGGDDENGSKKDRDRDRDRERDRERSSGRHRERDGERGSREKEREKDGERGGRDKERDREREKERERRDKEREKERERRDKEREKERAEREKEEKERPRRSMSRPERDRGERDFENRDGRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTTKSADFDDDEGGLTLNAHSRALLMQRLAGTDIPTSIGVQTVNGSVPVQQAFSMPFGNPGVIPASVLPTQVMPTPVVEPVGIPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVMHIYVDKRSAGFVYLQFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKFKDES 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04367 564 SMART rrm1_1 471 548 IPR000504 GO:0003723
Mepo2g04367 564 SMART rrm1_1 200 272 IPR000504 GO:0003723
Mepo2g04367 564 SMART rrm1_1 301 374 IPR000504 GO:0003723
Mepo2g04367 564 SUPERFAMILY RNA-binding domain, RBD 191 280 IPR035979 GO:0003676
Mepo2g04367 564 MobiDBLite consensus disorder prediction 1 199 - -
Mepo2g04367 564 Gene3D - 192 286 IPR012677 -
Mepo2g04367 564 Coils Coil 112 157 - -
Mepo2g04367 564 MobiDBLite consensus disorder prediction 13 198 - -
Mepo2g04367 564 CDD RRM1_RBM39_like 200 272 - -
Mepo2g04367 564 FunFam RNA-binding protein 39 isoform X1 192 284 - -
Mepo2g04367 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 268 IPR000504 GO:0003723
Mepo2g04367 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 372 IPR000504 GO:0003723
Mepo2g04367 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 493 546 IPR000504 GO:0003723
Mepo2g04367 564 SUPERFAMILY RNA-binding domain, RBD 300 552 IPR035979 GO:0003676
Mepo2g04367 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 378 IPR000504 GO:0003723
Mepo2g04367 564 FunFam Splicing factor CC1-like 285 389 - -
Mepo2g04367 564 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 393 488 IPR029123 -
Mepo2g04367 564 NCBIfam splicing factor, CC1-like family 82 562 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mepo2g04367 564 Gene3D - 296 392 IPR012677 -
Mepo2g04367 564 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 562 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mepo2g04367 564 Coils Coil 6 26 - -
Mepo2g04367 564 CDD RRM3_RBM39_like 469 551 - -
Mepo2g04367 564 Gene3D - 465 564 IPR012677 -
Mepo2g04367 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 276 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04367 Mepo-Chr2 52248161 52254215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04367 273 373 Eukaryotic Initiation Factors Gene Family AT4G34110 31.373 8.66e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04367 K13091 - gmx:100793461 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo2g04367 2 52248161 52254215 Mepo3g06775 3 81548854 81551792 ECH
Mepo2g04367 2 52248161 52254215 Mepo2g04367 2 52248161 52254215 ECH
Mepo2g04367 2 52248161 52254215 Mepo3g06775 3 81548854 81551792 PCT