LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g04357	ATGGGATGTGTTGTTAGTAGCAAGTACACTCCCCCTCGAAACCGAAACCGAAACCGGAGCCGCCATGTTGAGAGGTTGAAAGATGAGTATTCAAACAGTGGCTCTTCACTCAAACCAATCATCAGATATAACAAGAATTATTCATCTAAGCACTCAGAAGTGGAGACTAAGAAGAGAGTTGTGATTGTGAAGACTACTACATCAGTTGACAGTACTGGAAGAGAAGGAGAAAGGGGCGATGATAAGATACATGGTGCAGTTGGAGATATTTTTGATGATAAGTCTGAGGAGGAGAAAAAGAAGATGAAAATTGCTAGCTATGAAGTTAAAGTGGGGGAGGGTGAATGGCCAAAATGGCTAGTTGATAATATCTCTGAAGACGTTTTGGCTACTTTGATTCGCAAGACTGCTGATTCATATGAAAAACTAGGAAAGGTAGGACGTGGAACATATAGCAATGTATATAAAGCTAGAGATAAGGACAGTGGAAAGATAGTTGCTTTGAAGAAAGTAAGATTTGACACTTCGGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATTATGATAATACAAACGTTGGATCATCCAAATGTTATTAAACTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATCTTGTCTTTGAATACATGCAATGTGACCTTACTAGAGTTATCTCACGCCCTGGAGAAAGACTCAATGAACCACAGATAAAATGTTACATGCAACAGCTGCTATTGGGACTCCAGCATTGTCACGAGAGGGGAGTTATGCACCGAGATATTAAAGCTTCTAATTTGTTAATAAATAAACAAGGAGTGCTAAAAATTGCTGATTTTGGTCTTGCAAATTCTTTAAAAATTAAACCTAAAGGACCTCTTACAAATAGAGTTGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTAGGTTCAACTGATTACGATTATAGCATTGATATTTGGAGTGTAGGTTGCTTGTTGGCTGAGATGTTTGTTGGACGACCAATTATGCCCGGGAGGACAGAGATTGAACAACTCCATATGATAGTCAAACTTTGTGGTTCACCTTCAGAGGATTACTTGACAAAAATGAAGCTAAAGACAAGCTTCCGTACACCACAACGTTATAAAGCTAGTTTTGAAGAAAACTTTAAGGACTTCCCTTCATCTGCACTCAATCTCTTGACCACACTTCTTAATCTTGACTCGCAACATCGTGGCACTGCTGCCTCTGCTCTTGAAACTGATTTCTTCAAATCTAGTCCATTAGCATGTGACCTTTCAGAATTACCGGTGATAATCAACAGAGGTGATGATGAACGCACTCATATTAAGAGACGCAAAAGGCGCAAAGGGAAAAAGGGGCAACTATCTAAAAGAAGTGCAAGCAATTTAAGCCTGTCAGGAATGATCCAGGCAGCTGAACAAGGCAAGACTGATTCAGAAGCATCAAAGGAGGAAAAGAGTATAGGACAAAACATGTTAGAACAGGAAACAGGGAATAGTGGAAGCAGCAAAGCATCGTCAATATTTACTAACGAAAGGAGCATGAATGCATCTATATCCCCAGTTTTTCTCTCTAGCAGGAAAATATCCCCCAAAACTGAAGGCCATCCTAATGCTCTTAAGAATATAAAGAACTACCCACTCTTACATGCATCTATACTTGATATGATTAACCCCAAAGAAGGCAACGATTTTGGTCAGTTTCGTAGGTCCTTCTCGACATTGGATTTTCGGCTTGATCCAAATAAGCTATCGAGTCTCTACGGATCAAATAGTAAGTTGGACCATGAAGTTTGA	1815	0.3939	MGCVVSSKYTPPRNRNRNRSRHVERLKDEYSNSGSSLKPIIRYNKNYSSKHSEVETKKRVVIVKTTTSVDSTGREGERGDDKIHGAVGDIFDDKSEEEKKKMKIASYEVKVGEGEWPKWLVDNISEDVLATLIRKTADSYEKLGKVGRGTYSNVYKARDKDSGKIVALKKVRFDTSDSESIKFMAREIMIIQTLDHPNVIKLEGLATSRMQYSLYLVFEYMQCDLTRVISRPGERLNEPQIKCYMQQLLLGLQHCHERGVMHRDIKASNLLINKQGVLKIADFGLANSLKIKPKGPLTNRVVTLWYRAPELLLGSTDYDYSIDIWSVGCLLAEMFVGRPIMPGRTEIEQLHMIVKLCGSPSEDYLTKMKLKTSFRTPQRYKASFEENFKDFPSSALNLLTTLLNLDSQHRGTAASALETDFFKSSPLACDLSELPVIINRGDDERTHIKRRKRRKGKKGQLSKRSASNLSLSGMIQAAEQGKTDSEASKEEKSIGQNMLEQETGNSGSSKASSIFTNERSMNASISPVFLSSRKISPKTEGHPNALKNIKNYPLLHASILDMINPKEGNDFGQFRRSFSTLDFRLDPNKLSSLYGSNSKLDHEV	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g04357	604	SMART	serkin_6	140	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo2g04357	604	FunFam	Putative serine/threonine-protein kinase	223	460	-	-
	Mepo2g04357	604	FunFam	probable serine/threonine-protein kinase At1g54610	127	222	-	-
	Mepo2g04357	604	Pfam	Protein kinase domain	140	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo2g04357	604	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	260	272	IPR008271	GO:0004672\|GO:0006468
	Mepo2g04357	604	ProSitePatterns	Protein kinases ATP-binding region signature.	146	169	IPR017441	GO:0005524
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	447	461	-	-
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	462	482	-	-
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	497	512	-	-
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	71	89	-	-
	Mepo2g04357	604	Gene3D	Transferase(Phosphotransferase) domain 1	223	462	-	-
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	1	34	-	-
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	70	89	-	-
	Mepo2g04357	604	PANTHER	CELL DIVISION PROTEIN KINASE	138	427	-	-
	Mepo2g04357	604	Gene3D	Phosphorylase Kinase; domain 1	129	222	-	-
	Mepo2g04357	604	SUPERFAMILY	Protein kinase-like (PK-like)	134	427	IPR011009	-
	Mepo2g04357	604	ProSiteProfiles	Protein kinase domain profile.	140	422	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo2g04357	604	MobiDBLite	consensus disorder prediction	445	512	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g04357	Mepo-Chr2	52127454	52135386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g04357	135	455	Core Cell Cycle Gene Families	AT5G10270	45.428	9.32e-92	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Mepo2g04357		Pkinase	1.3e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g04357	K08819		-	gmx:102667260	700.664