Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g04245 ATGCAAAATCTGACAGAAATCACTCATCAACAAAATACAAATATTCCCCTTCAAAACCTCTCTCAACTAAGCACCGAAATGGATTCTATTCAAAGCTTCATATCCCAATCCATTCAAACAAACACACTCCTCCCCAAACAACACTTAGACTCACTCTCCAACCAAATCTCTTCCACAATTTGTCAAGTCATCATCAATGCAACTGCCCTTCTCGCCACTCGTCCAGAAGCAATAACAATCCCACCAACCCATGGTTACTGGACAAGTGGTGAGAAGACCAAATACATTGATGATGACATGGCGAATCTCACTCATAACGAGCATTCCAAAATCGTGGAACTCGACGCAATGGAACTGCTTGCGAAGCACTTCCACTTCTGCGAGATTTGCGGGAAAGGTTTCACGCGCGATGCGAACCTACGCATGCACATGCGAGCGCATGGAGAACAGTTCAAGACACATGAAGCGTTACGTAGCGTGAGGGAAAAGCAAGCGCGCTTAACGGCGACCCGATTTTCTTGTCCTTACGAAGGATGCAAAAGGAACAGGTTACACAAGAAGTTCAATCCGTTGAAATCGGTGTTCTGTTTGAGGAACCATTTCAAGAGAAGTCACTGTCCAAAAACTCACACGTGCGATCGGTGTCGGAGGAAGAGTTTTGCGGTGGTGTCGGATTTGAAGAGTCACGTGAAACAGTGTAGGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAGCGGTTTGAAGGACACTCGCCGGCGGTTGTAGAAGATAAAGGAAAATCAATGACGGCGGCGCCGGCAGAAGAGAAAGGTGTGGGTGGATTTTTTATGAAGGAAAATGATTGCATGGATGCGTTACCGGAAGGTTTCTTTGATGATTTGGATAAATTTTGGGTTTGA 939 0.459 MQNLTEITHQQNTNIPLQNLSQLSTEMDSIQSFISQSIQTNTLLPKQHLDSLSNQISSTICQVIINATALLATRPEAITIPPTHGYWTSGEKTKYIDDDMANLTHNEHSKIVELDAMELLAKHFHFCEICGKGFTRDANLRMHMRAHGEQFKTHEALRSVREKQARLTATRFSCPYEGCKRNRLHKKFNPLKSVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHVKQCRGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEDKGKSMTAAPAEEKGVGGFFMKENDCMDALPEGFFDDLDKFWV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g04245 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Mepo2g04245 312 SMART c2h2final6 210 231 IPR013087 -
Mepo2g04245 312 SMART c2h2final6 125 147 IPR013087 -
Mepo2g04245 312 SMART c2h2final6 172 205 IPR013087 -
Mepo2g04245 312 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 95 278 IPR044300 GO:0010044|GO:0010447
Mepo2g04245 312 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Mepo2g04245 312 Gene3D Classic Zinc Finger 207 281 - -
Mepo2g04245 312 Gene3D Classic Zinc Finger 126 149 - -
Mepo2g04245 312 FunFam B-cell CLL/lymphoma 6, member B 122 147 - -
Mepo2g04245 312 SUPERFAMILY beta-beta-alpha zinc fingers 123 147 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g04245 Mepo-Chr2 51208427 51209845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g04245 110 284 C2H2 Transcription Factor Family AT1G34370 53.333 1.60e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo2g04245 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g04245 - - cam:101510069 402.134