Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g04227 | ATGAGAGAAGCTTCAACCGATTCAGCGAAAATGGAAGCATTCGGCGGTTACTTGGTCGATGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGATTTCCTCAAAAGTTTCAGATCTGGACAACGGAATGAACTCTATTACGAATCGGAGATTGAAGTCATGAGAGCTAACGAATCCAACACCATGTTCATTGATTTCGAACATGTTATTAGATTCAGCGATGTTCTTCAGAAAGCTATCTCTGATGAATATTTGAGGTTTGAACCTTACTTGCAGAATGCCTGCAAGAGGTTTGTTATGGAGCTTAAACCGACATTCATTTCTGATGATAACCCTAACAAAGATATCAATGTCGCATTCTATAACATTCCAATTGTCAAGAGGTTAAGGGAATTGGCTACATCAGAGATTGGTAGGCTTGTATCTGTAACAGGAGTGGTAACAAGGACAAGTGAGGTTCGACCTGAGCTTCTCCAAGGAACTTTCAAGTGTCTAGAATGTGGTGGGGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCCACAATTTGTCCAAATGCTACATGTAACAACAGAGCAAAGTGGGCATTGCTTCGCCAAGAGAGCAAATTTACTGATTGGCAAAGGGTCAGAATGCAGGAGACGTCCAATGAGATACCTGCTGGCTCGCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTAGAACATGCTAGGGCTGGTGACACGGTGATTTTTACTGGAACTGTAATTGTCATACCTGATATATTGGCGTTGGCGTCCCCTGGAGAGAGATCAGAATGCCGTAGGGAAGCTTCTCAACGCAAGGGTGCTTCATCTGGAAATGAAGGTGTGAGGGGCCTCAGGGCTTTGGGAGTCAGAGACCTCTCCTACCGACTTGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATTGATATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCTGCAATTCACTGCTCAGGAACTGGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAGCTTGTTGAAAGTGTTGCTCCAACTATTTTTGGTCATCAAGATATTAAGCGAGCAATCCTTCTTATGCTTATGAGTGGGGTTCACAAATCTACTCATGAAGGCATCAGCCTTAGAGGAGACATAAATGTTTGTATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTTCTTAAGTATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCCGGAAAGTCATCATCTGCTGCTGGGTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGAGAGTTTTGTATTGAGGCCGGCGCTTTGATGCTTGCTGACAATGGCATTTGCTGCATCGATGAATTTGACAAGATGGACATAAGAGATCAGGTTGCAATTCATGAGGCTATGGAACAACAAACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCTGGAGGACGGTACGATAAGTCTAAACCACTGAAGTACAACGTGGCTCTTCCACCGGCTATACTTTCAAGGTTTGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGCGTTATATAGCCTATGCAAAAACTCTTAAACCAAAGCTAACGTCAGATGCAAGAAAACTACTGGTAGACTCTTATGTTTCTCTCCGTAGAGCTGATACAAATCCTGGCAGTAGGGTTGCATATCGGATGACAGTTAGGCAATTGGAAGCTTTAATCAGGTTGTCGGAGGCCATTTCACGGTGTCATTTGGATAATCAGGTACAACCTCGTCATGTTCGTTTAGCAGTAAAACTGCTGCAGACGTCTATAATAAGAGTGGAGTCAAGTGAGATTGATTTATCTGAGTTTCAAGATCAAGATATGGACGAAGAAGCAGGTAGTGGCGATGGAAATGATAATAATGATGCTGATGGTCAAGTGGGAAACTCTACCGCTGAGGAAGCCGCTGGAACCAATGAAAAACCAGCCGATGGATCTAACCCCCCAAGAAAAAAATCGACTGTAACTGATGAATACTTTCAAAGGATTACCAAGGCCCTTGTCATGCGTCTTAGACAGCATGAGGAGACCGTAATGCAAGAAGGAAGTGGCTTAGCTGGGATGAAGCAACGGGATTTGATTAAATGGTATGTAGACCAACAAAATGAGAAAAATAATTACAGTTCTGTGGAGGAGGCCAAAGTTGAGATTTCCCAAATTAAAGCAATTATAGAGATTTTAATTCGAAGAGAGGGGCATTTGATCGTGATAGATGATGGCAGGCAAGCAGCATCAGAAGCTGCTGGTGCAGAACAATCCGAGTCTGCAGCTAGAAATGATAGAACTTTGGCTGTGGCTCCTAATTATGTCGTTGATTGA | 2538 | 0.4259 | MREASTDSAKMEAFGGYLVDEKAVRVENAFLDFLKSFRSGQRNELYYESEIEVMRANESNTMFIDFEHVIRFSDVLQKAISDEYLRFEPYLQNACKRFVMELKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRAKWALLRQESKFTDWQRVRMQETSNEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGASSGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDSDEDDLQFTAQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIAYAKTLKPKLTSDARKLLVDSYVSLRRADTNPGSRVAYRMTVRQLEALIRLSEAISRCHLDNQVQPRHVRLAVKLLQTSIIRVESSEIDLSEFQDQDMDEEAGSGDGNDNNDADGQVGNSTAEEAAGTNEKPADGSNPPRKKSTVTDEYFQRITKALVMRLRQHEETVMQEGSGLAGMKQRDLIKWYVDQQNEKNNYSSVEEAKVEISQIKAIIEILIRREGHLIVIDDGRQAASEAAGAEQSESAARNDRTLAVAPNYVVD | 845 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g04227 | 845 | Pfam | MCM6 C-terminal winged-helix domain | 724 | 844 | IPR041024 | - | |
| Mepo2g04227 | 845 | Pfam | MCM N-terminal domain | 28 | 122 | IPR027925 | - | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 454 | 468 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 506 | 518 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 533 | 541 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 394 | 409 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 482 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | Gene3D | - | 721 | 845 | - | - | |
| Mepo2g04227 | 845 | Gene3D | - | 129 | 257 | IPR012340 | - | |
| Mepo2g04227 | 845 | Pfam | MCM P-loop domain | 341 | 563 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | Pfam | MCM AAA-lid domain | 578 | 663 | IPR041562 | - | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 176 | 193 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 229 | 240 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 126 | 138 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 288 | 309 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mepo2g04227 | 845 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 84 | 96 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Mepo2g04227 | 845 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 363 | 667 | IPR027417 | - | |
| Mepo2g04227 | 845 | SUPERFAMILY | Nucleic acid-binding proteins | 30 | 259 | IPR012340 | - | |
| Mepo2g04227 | 845 | CDD | MCM6 | 356 | 662 | - | - | |
| Mepo2g04227 | 845 | ProSiteProfiles | MCM family domain profile. | 353 | 559 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | ProSitePatterns | MCM family signature. | 462 | 470 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Mepo2g04227 | 845 | Gene3D | - | 338 | 668 | IPR027417 | - | |
| Mepo2g04227 | 845 | FunFam | DNA helicase | 722 | 845 | - | - | |
| Mepo2g04227 | 845 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 21 | 784 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | MobiDBLite | consensus disorder prediction | 674 | 730 | - | - | |
| Mepo2g04227 | 845 | Gene3D | - | 18 | 125 | - | - | |
| Mepo2g04227 | 845 | SMART | mcm | 125 | 664 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Mepo2g04227 | 845 | MobiDBLite | consensus disorder prediction | 674 | 690 | - | - | |
| Mepo2g04227 | 845 | MobiDBLite | consensus disorder prediction | 692 | 709 | - | - | |
| Mepo2g04227 | 845 | Coils | Coil | 783 | 803 | - | - | |
| Mepo2g04227 | 845 | Gene3D | - | 156 | 207 | - | - | |
| Mepo2g04227 | 845 | FunFam | DNA helicase | 338 | 668 | - | - | |
| Mepo2g04227 | 845 | FunFam | DNA helicase | 156 | 207 | - | - | |
| Mepo2g04227 | 845 | Pfam | MCM OB domain | 129 | 257 | IPR033762 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g04227 | Mepo-Chr2 | 51058930 | 51065007 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g04227 | 11 | 845 | Core DNA Replication Machinery Family | AT5G44635 | 71.147 | 0.0 | 1269 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g04227 | K02542 | - | gmx:100787290 | 1376.69 |