LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo2g04092	ATGATTGGTAGGTCTCTTACAGGTAAAAGAAGATTGAAGGATTTATTGGTTCATAAAGATAATCGCTTTTGTGCTGATTGTAGTGCTCCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGGGTGCACAGAAGTCTTGGCACTCACATATCAAAGATTTTGTCTGTAACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCGTCTGCCAATTCAATTTATGAGGCTTTTATTCCGGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAAGAACGTGCAAAATTCATCAGGTCAAAGTATGAGCGTCAAGAATTTTTGAAACATAGTTTGCGCATTTTATCAACAAAAAGCAAACGTCAAACAAGTTTCTCCAAAAAGATCATGGATAGCTTTCGAAAATCTAGTGGTTCAAAGAATATGGAAGGAATGATAGAATTTATTGGAATGCTGAAAGTGAAAGTGGTCAAAGGCACAAATTTAGCAATCAGAGATATGAGGACAAGTGATCCATATGTTGTTTTGAAGCTTGGCCAACAGACTGTTCAGACGACTGTAATAAGGAGTAATTTGAATCCAGTTTGGAACGAGGAACTTATGTTGTCCGTTCCTCAGCAATTTGGACCAATAAGTTTGGAGGTATTTGATCATGACTTGTTCTCGGCTGATGATATAATGGGAGAAGCGCAGATTGATCTTCAACCTATAATAAATTCTGCAATGGCATTTGGAGATACTGGAATGTTTGATGATATGCGAATAGGAAAATGGCTGAAATCTAATGACAATGCACTTATAGAGGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATGTTTATTAAGCTCCAAAATGTCGAATGTGGAGAATTAAATTTAGAACTCGAGTGGATGTCTCTTGATCATTAG	969	0.3684	MIGRSLTGKRRLKDLLVHKDNRFCADCSAPDPKWASANIGVFVCLKCCGVHRSLGTHISKILSVTLDEWSNDEIDAMMEVGGNASANSIYEAFIPEGYTKPGPDASHEERAKFIRSKYERQEFLKHSLRILSTKSKRQTSFSKKIMDSFRKSSGSKNMEGMIEFIGMLKVKVVKGTNLAIRDMRTSDPYVVLKLGQQTVQTTVIRSNLNPVWNEELMLSVPQQFGPISLEVFDHDLFSADDIMGEAQIDLQPIINSAMAFGDTGMFDDMRIGKWLKSNDNALIEDSIVNIIDGKVKQEMFIKLQNVECGELNLELEWMSLDH	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo2g04092	322	CDD	ArfGap	12	118	-	-
	Mepo2g04092	322	SMART	arf_gap_3	10	131	IPR001164	GO:0005096
	Mepo2g04092	322	Pfam	Putative GTPase activating protein for Arf	10	125	IPR001164	GO:0005096
	Mepo2g04092	322	ProSiteProfiles	C2 domain profile.	148	263	IPR000008	-
	Mepo2g04092	322	PRINTS	HIV Rev interacting protein signature	40	57	IPR001164	GO:0005096
	Mepo2g04092	322	PRINTS	HIV Rev interacting protein signature	21	40	IPR001164	GO:0005096
	Mepo2g04092	322	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Mepo2g04092	322	Pfam	C2 domain	167	257	IPR000008	-
	Mepo2g04092	322	CDD	C2_ArfGAP	165	309	-	-
	Mepo2g04092	322	SMART	C2_3c	167	262	IPR000008	-
	Mepo2g04092	322	FunFam	Arf-GAP with dual PH domain-containing protein 1	5	132	-	-
	Mepo2g04092	322	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	164	319	IPR035892	-
	Mepo2g04092	322	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	125	IPR037278	-
	Mepo2g04092	322	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	164	322	-	-
	Mepo2g04092	322	Gene3D	C2 domain	164	321	IPR035892	-
	Mepo2g04092	322	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	9	137	IPR001164	GO:0005096
	Mepo2g04092	322	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	8	321	IPR044518	GO:0005096\|GO:0005543
	Mepo2g04092	322	Gene3D	Arf GTPase activating protein	4	130	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo2g04092	Mepo-Chr2	49877101	49879894	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo2g04092	2	322	C2H2 Transcription Factor Family	AT4G21160	70.606	0.0	501

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo2g04092	K12486		-	gmx:100806567	528.48